1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01013416001

GSVIVT01013416001


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana


Gene families : OG0016322 (Archaeplastida) Phylogenetic Tree(s): OG0016322_tree ,
OG_05_0015873 (LandPlants) Phylogenetic Tree(s): OG_05_0015873_tree ,
OG_06_0015641 (SeedPlants) Phylogenetic Tree(s): OG_06_0015641_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013416001
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Gb_15394 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_5769g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
MF GO:0003972 RNA ligase (ATP) activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008452 RNA ligase activity IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 67 97
IPR002885 Pentatricopeptide_repeat 443 490
IPR002885 Pentatricopeptide_repeat 543 591
IPR002885 Pentatricopeptide_repeat 210 256
IPR002885 Pentatricopeptide_repeat 287 309
IPR002885 Pentatricopeptide_repeat 386 409
IPR002885 Pentatricopeptide_repeat 313 340
IPR002885 Pentatricopeptide_repeat 619 642
IPR002885 Pentatricopeptide_repeat 182 209
IPR002885 Pentatricopeptide_repeat 102 118
No external refs found!