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Description : Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0010507 (Archaeplastida) Phylogenetic Tree(s): OG0010507_tree ,
OG_05_0010501 (LandPlants) Phylogenetic Tree(s): OG_05_0010501_tree ,
OG_06_0010721 (SeedPlants) Phylogenetic Tree(s): OG_06_0010721_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01013571001 | |
| Cluster | HCCA: Cluster_220 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00066p00041260 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g06710,... | 0.05 | Archaeplastida | |
| AT1G06710 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | Archaeplastida | |
| LOC_Os04g41140.1 | No alias | Pentatricopeptide repeat-containing protein At1g06710,... | 0.05 | Archaeplastida | |
| MA_10432217g0030 | No alias | Pentatricopeptide repeat-containing protein At1g06710,... | 0.05 | Archaeplastida | |
| Zm00001e007745_P002 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Neighborhood |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Neighborhood |
| MF | GO:0003909 | DNA ligase activity | IEP | Neighborhood |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Neighborhood |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Neighborhood |
| CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
| BP | GO:0006310 | DNA recombination | IEP | Neighborhood |
| BP | GO:0006401 | RNA catabolic process | IEP | Neighborhood |
| BP | GO:0006402 | mRNA catabolic process | IEP | Neighborhood |
| BP | GO:0006405 | RNA export from nucleus | IEP | Neighborhood |
| BP | GO:0006406 | mRNA export from nucleus | IEP | Neighborhood |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0008536 | Ran GTPase binding | IEP | Neighborhood |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Neighborhood |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | Neighborhood |
| BP | GO:0016579 | protein deubiquitination | IEP | Neighborhood |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Neighborhood |
| BP | GO:0016973 | poly(A)+ mRNA export from nucleus | IEP | Neighborhood |
| MF | GO:0017016 | Ras GTPase binding | IEP | Neighborhood |
| MF | GO:0031267 | small GTPase binding | IEP | Neighborhood |
| BP | GO:0046907 | intracellular transport | IEP | Neighborhood |
| BP | GO:0048519 | negative regulation of biological process | IEP | Neighborhood |
| BP | GO:0050657 | nucleic acid transport | IEP | Neighborhood |
| BP | GO:0050658 | RNA transport | IEP | Neighborhood |
| MF | GO:0051020 | GTPase binding | IEP | Neighborhood |
| BP | GO:0051028 | mRNA transport | IEP | Neighborhood |
| BP | GO:0051168 | nuclear export | IEP | Neighborhood |
| BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
| BP | GO:0051236 | establishment of RNA localization | IEP | Neighborhood |
| BP | GO:0051641 | cellular localization | IEP | Neighborhood |
| BP | GO:0051649 | establishment of localization in cell | IEP | Neighborhood |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Neighborhood |
| BP | GO:0071702 | organic substance transport | IEP | Neighborhood |
| BP | GO:0071705 | nitrogen compound transport | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 669 | 717 |
| IPR002885 | Pentatricopeptide_repeat | 371 | 415 |
| IPR002885 | Pentatricopeptide_repeat | 548 | 596 |
| IPR002885 | Pentatricopeptide_repeat | 486 | 527 |
| IPR002885 | Pentatricopeptide_repeat | 739 | 787 |
| IPR002885 | Pentatricopeptide_repeat | 298 | 345 |
| IPR002885 | Pentatricopeptide_repeat | 882 | 906 |
| IPR002885 | Pentatricopeptide_repeat | 805 | 838 |
| IPR002885 | Pentatricopeptide_repeat | 634 | 663 |
| IPR002885 | Pentatricopeptide_repeat | 201 | 242 |
| IPR002885 | Pentatricopeptide_repeat | 919 | 946 |
| IPR002885 | Pentatricopeptide_repeat | 271 | 291 |
| IPR002885 | Pentatricopeptide_repeat | 450 | 476 |
| No external refs found! |