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  5. GSVIVT01013631001

GSVIVT01013631001


Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0000043 (SeedPlants) Phylogenetic Tree(s): OG_06_0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013631001
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00142260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
AMTR_s00076p00127530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
AMTR_s00080p00153120 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
AT1G16530 LBD3, ASL9 ASYMMETRIC LEAVES 2-like 9 0.07 Archaeplastida
AT1G31320 LBD4 LOB domain-containing protein 4 0.04 Archaeplastida
AT2G28500 LBD11 LOB domain-containing protein 11 0.03 Archaeplastida
AT2G30130 LBD12, ASL5, PCK1 Lateral organ boundaries (LOB) domain family protein 0.04 Archaeplastida
AT2G40470 LBD15, ASL11 LOB domain-containing protein 15 0.04 Archaeplastida
AT3G26660 LBD24 LOB domain-containing protein 24 0.03 Archaeplastida
AT3G27650 LBD25 LOB domain-containing protein 25 0.03 Archaeplastida
GSVIVT01003546001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01006269001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01016330001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
GSVIVT01020353001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
Gb_08465 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Gb_10524 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_19390 No alias transcription factor (AS2/LOB) 0.07 Archaeplastida
Gb_20676 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_21467 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_23794 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_38119 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_40684 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_40767 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
LOC_Os11g01550.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os12g01550.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_10430986g0010 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_10434782g0020 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_127139g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_292200g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_88711g0010 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
MA_9412105g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Mp1g14500.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Mp4g10500.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Mp8g09250.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Pp3c20_10200V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Archaeplastida
Pp3c22_5950V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.02 Archaeplastida
Solyc01g044520.2.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc02g067800.4.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc02g069440.3.1 No alias transcription factor (AS2/LOB) 0.08 Archaeplastida
Solyc02g086480.1.1 No alias transcription factor (AS2/LOB) 0.12 Archaeplastida
Solyc06g050950.3.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Zm00001e005116_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e016785_P005 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Zm00001e030195_P001 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 13 110
No external refs found!