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  5. AMTR_s00038p00212100

AMTR_s00038p00212100 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00038.171

Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana


Gene families : OG0000639 (Archaeplastida) Phylogenetic Tree(s): OG0000639_tree ,
OG_05_0000548 (LandPlants) Phylogenetic Tree(s): OG_05_0000548_tree ,
OG_06_0000334 (SeedPlants) Phylogenetic Tree(s): OG_06_0000334_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00038p00212100
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00115860 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.01 Archaeplastida
AT3G54770 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 Archaeplastida
LOC_Os02g51890.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
MA_18853g0020 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
Solyc04g082770.4.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 13 70
No external refs found!