GSVIVT01013765001

Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein recruiting.ARF-GTPase

Gene families : OG0000310 (Archaeplastida) Phylogenetic Tree(s): OG0000310_tree ,
OG_05_0000213 (LandPlants) Phylogenetic Tree(s): OG_05_0000213_tree ,
OG_06_0000536 (SeedPlants) Phylogenetic Tree(s): OG_06_0000536_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01013765001
Cluster	HCCA: Cluster_215

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00209290	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	Archaeplastida
AT1G10630	ATARFA1F, ARFA1F	ADP-ribosylation factor A1F	0.04	Archaeplastida
AT1G70490	ARFA1D, ATARFA1D	Ras-related small GTP-binding family protein	0.04	Archaeplastida
AT2G15310	ATARFB1A, ARFB1A	ADP-ribosylation factor B1A	0.03	Archaeplastida
AT2G47170	ARF1A1C	Ras-related small GTP-binding family protein	0.05	Archaeplastida
AT3G03120	ATARFB1C, ARFB1C	ADP-ribosylation factor B1C	0.03	Archaeplastida
AT3G62290	ARFA1E, ATARFA1E	ADP-ribosylation factor A1E	0.03	Archaeplastida
AT5G14670	ATARFA1B, ARFA1B	ADP-ribosylation factor A1B	0.03	Archaeplastida
Cpa\|evm.model.tig00001093.2	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	Archaeplastida
Cpa\|evm.model.tig00021127.129	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	Archaeplastida
Cre12.g486250	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	Archaeplastida
Cre12.g487850	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	Archaeplastida
Cre12.g535900	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	Archaeplastida
Gb_00987	No alias	ARF-GTPase	0.06	Archaeplastida
LOC_Os07g12170.1	No alias	ARF-GTPase	0.07	Archaeplastida
LOC_Os07g12200.1	No alias	ARF-GTPase	0.04	Archaeplastida
LOC_Os08g15040.1	No alias	ARF-GTPase	0.03	Archaeplastida
MA_167779g0010	No alias	ADP-ribosylation factor 3 OS=Arabidopsis thaliana...	0.02	Archaeplastida
MA_24477g0010	No alias	ARF-GTPase	0.02	Archaeplastida
MA_92857g0020	No alias	no hits & (original description: none)	0.05	Archaeplastida
Mp3g13920.1	No alias	ARF-GTPase	0.02	Archaeplastida
Pp3c10_20740V3.1	No alias	ADP-ribosylation factor A1E	0.05	Archaeplastida
Pp3c12_14910V3.1	No alias	ADP-ribosylation factor A1E	0.05	Archaeplastida
Pp3c13_24080V3.1	No alias	ADP-ribosylation factor B1B	0.02	Archaeplastida
Pp3c18_16800V3.1	No alias	ADP-ribosylation factor A1B	0.02	Archaeplastida
Pp3c4_20580V3.1	No alias	ADP-ribosylation factor A1E	0.02	Archaeplastida
Solyc04g025560.4.1	No alias	ARF-GTPase	0.03	Archaeplastida
Zm00001e019488_P002	No alias	ARF-GTPase	0.03	Archaeplastida
Zm00001e025541_P003	No alias	ARF-GTPase	0.03	Archaeplastida
Zm00001e033127_P003	No alias	ARF-GTPase	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004525	ribonuclease III activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006897	endocytosis	IEP	Neighborhood
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010038	response to metal ion	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Neighborhood
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Neighborhood
BP	GO:0098657	import into cell	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006689	Small_GTPase_ARF/SAR	1	156

External Links

No external refs found!

GSVIVT01013765001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation