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  5. GSVIVT01013771001

GSVIVT01013771001


Description : Polygalacturonase At1g48100 OS=Arabidopsis thaliana


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000636 (LandPlants) Phylogenetic Tree(s): OG_05_0000636_tree ,
OG_06_0001748 (SeedPlants) Phylogenetic Tree(s): OG_06_0001748_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013771001
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00197210 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AT1G05650 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G05660 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G43880 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G43890 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G26610 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01038241001 No alias Polygalacturonase OS=Prunus persica 0.04 Archaeplastida
Mp3g21140.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc06g068040.3.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
Solyc12g019220.1.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 119 200
IPR000743 Glyco_hydro_28 238 457
No external refs found!