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  5. GSVIVT01013790001

GSVIVT01013790001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.KNOX transcription factor


Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0003089 (SeedPlants) Phylogenetic Tree(s): OG_06_0003089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013790001
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00169620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AMTR_s00085p00165180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AT1G23380 KNAT6, KNAT6L, KNAT6S KNOTTED1-like homeobox gene 6 0.06 Archaeplastida
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.03 Archaeplastida
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.04 Archaeplastida
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01007715001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Gb_00572 No alias transcription factor (KNOX) 0.03 Archaeplastida
Gb_00573 No alias transcription factor (KNOX) 0.03 Archaeplastida
Gb_10887 No alias transcription factor (KNOX) 0.06 Archaeplastida
Gb_14470 No alias transcription factor (KNOX) 0.02 Archaeplastida
LOC_Os01g19694.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
LOC_Os03g51690.2 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os03g51710.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
LOC_Os03g56140.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os05g03884.1 No alias transcription factor (KNOX) 0.05 Archaeplastida
LOC_Os07g03770.1 No alias transcription factor (KNOX) 0.05 Archaeplastida
LOC_Os08g19650.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
Pp3c6_1550V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 Archaeplastida
Smo159366 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
Solyc04g077210.3.1 No alias transcription factor (KNOX) 0.07 Archaeplastida
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.06 Archaeplastida
Zm00001e005545_P001 No alias transcription factor (KNOX) 0.09 Archaeplastida
Zm00001e005547_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e005825_P002 No alias transcription factor (KNOX) 0.05 Archaeplastida
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.08 Archaeplastida
Zm00001e017489_P001 No alias transcription factor (KNOX) 0.06 Archaeplastida
Zm00001e027562_P001 No alias transcription factor (KNOX) 0.08 Archaeplastida
Zm00001e029453_P001 No alias transcription factor (KNOX) 0.05 Archaeplastida
Zm00001e032761_P001 No alias transcription factor (KNOX) 0.06 Archaeplastida
Zm00001e039044_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0120009 intermembrane lipid transfer IEP Neighborhood
MF GO:0120013 intermembrane lipid transfer activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1901642 nucleoside transmembrane transport IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR008422 Homeobox_KN_domain 255 294
IPR005540 KNOX1 80 121
IPR005541 KNOX2 132 178
IPR005539 ELK_dom 215 236
No external refs found!