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  5. GSVIVT01013832001

GSVIVT01013832001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0009459 (LandPlants) Phylogenetic Tree(s): OG_05_0009459_tree ,
OG_06_0008011 (SeedPlants) Phylogenetic Tree(s): OG_06_0008011_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013832001
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.01 Archaeplastida
AT1G05310 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT1G11370 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT5G18990 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G47500 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 Archaeplastida
Gb_27225 No alias pectin methylesterase 0.03 Archaeplastida
Gb_32012 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os04g46740.1 No alias pectin methylesterase 0.05 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.01 Archaeplastida
Mp1g17560.1 No alias pectin methylesterase 0.04 Archaeplastida
Mp2g19430.1 No alias pectin methylesterase 0.03 Archaeplastida
Pp3c12_23790V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c25_760V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_12660V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Pp3c5_23400V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Smo101090 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 Archaeplastida
Smo104861 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Solyc01g109740.3.1 No alias pectin methylesterase 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 69 354
No external refs found!