GSVIVT01013838001

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase

Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0009459 (LandPlants) Phylogenetic Tree(s): OG_05_0009459_tree ,
OG_06_0008011 (SeedPlants) Phylogenetic Tree(s): OG_06_0008011_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01013838001
Cluster	HCCA: Cluster_228

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00056p00166920	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.05	Archaeplastida
AMTR_s00106p00092510	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
AMTR_s00116p00025230	evm_27.TU.AmTr_v1...	Probable pectinesterase 8 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT2G36710	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G19730	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
GSVIVT01015022001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
GSVIVT01015290001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01023786001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
Gb_01460	No alias	pectin methylesterase	0.03	Archaeplastida
Gb_23209	No alias	pectin methylesterase	0.04	Archaeplastida
Gb_32012	No alias	pectin methylesterase	0.06	Archaeplastida
Gb_39595	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os01g44340.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os03g19610.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os12g37660.1	No alias	pectin methylesterase	0.03	Archaeplastida
MA_10428610g0010	No alias	pectin methylesterase	0.04	Archaeplastida
MA_66089g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_87592g0010	No alias	pectin methylesterase	0.03	Archaeplastida
Pp3c10_19460V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c16_19430V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c18_13190V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c1_6010V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c25_3840V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c3_32350V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c3_35240V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c5_12660V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c5_12820V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c5_23400V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c8_1440V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Solyc01g079180.4.1	No alias	pectin methylesterase	0.04	Archaeplastida
Solyc10g083820.2.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e020994_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e027944_P002	No alias	pectin methylesterase	0.02	Archaeplastida
Zm00001e033546_P001	No alias	pectin methylesterase	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006855	drug transmembrane transport	IEP	Neighborhood
BP	GO:0008272	sulfate transport	IEP	Neighborhood
MF	GO:0008509	anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015116	sulfate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0015858	nucleoside transport	IEP	Neighborhood
BP	GO:0015893	drug transport	IEP	Neighborhood
BP	GO:0015931	nucleobase-containing compound transport	IEP	Neighborhood
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0072348	sulfur compound transport	IEP	Neighborhood
BP	GO:1901264	carbohydrate derivative transport	IEP	Neighborhood
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Neighborhood
BP	GO:1901642	nucleoside transmembrane transport	IEP	Neighborhood
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	74	359

External Links

No external refs found!

GSVIVT01013838001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation