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Description : Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0027024 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0026559 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0024959 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01013840001 | |
| Cluster | HCCA: Cluster_155 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G14770 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003860 | 3-hydroxyisobutyryl-CoA hydrolase activity | IEP | Neighborhood |
| MF | GO:0004386 | helicase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006260 | DNA replication | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
| BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
| BP | GO:0008033 | tRNA processing | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0008565 | protein transporter activity | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0016289 | CoA hydrolase activity | IEP | Neighborhood |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Neighborhood |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Neighborhood |
| MF | GO:0016790 | thiolester hydrolase activity | IEP | Neighborhood |
| MF | GO:0032977 | membrane insertase activity | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 648 | 677 |
| IPR002885 | Pentatricopeptide_repeat | 340 | 363 |
| IPR002885 | Pentatricopeptide_repeat | 535 | 567 |
| IPR002885 | Pentatricopeptide_repeat | 18 | 44 |
| IPR002885 | Pentatricopeptide_repeat | 120 | 169 |
| IPR002885 | Pentatricopeptide_repeat | 260 | 309 |
| IPR002885 | Pentatricopeptide_repeat | 365 | 414 |
| IPR002885 | Pentatricopeptide_repeat | 50 | 99 |
| IPR002885 | Pentatricopeptide_repeat | 575 | 621 |
| IPR002885 | Pentatricopeptide_repeat | 434 | 482 |
| IPR002885 | Pentatricopeptide_repeat | 191 | 239 |
| IPR002885 | Pentatricopeptide_repeat | 679 | 725 |
| No external refs found! |