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  5. GSVIVT01013901001

GSVIVT01013901001


Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0001103 (Archaeplastida) Phylogenetic Tree(s): OG0001103_tree ,
OG_05_0000849 (LandPlants) Phylogenetic Tree(s): OG_05_0000849_tree ,
OG_06_0000726 (SeedPlants) Phylogenetic Tree(s): OG_06_0000726_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013901001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AT1G03790 SOM Zinc finger C-x8-C-x5-C-x3-H type family protein 0.06 Archaeplastida
AT5G07500 PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.14 Archaeplastida
LOC_Os01g53650.1 No alias mRNA-binding regulatory factor (TZF) 0.03 Archaeplastida
LOC_Os05g45020.1 No alias mRNA-binding regulatory factor (TZF) 0.04 Archaeplastida
LOC_Os07g47240.1 No alias mRNA-binding regulatory factor (TZF) 0.03 Archaeplastida
MA_126170g0010 No alias mRNA-binding regulatory factor (TZF) 0.03 Archaeplastida
Smo441947 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 Archaeplastida
Solyc07g053750.1.1 No alias mRNA-binding regulatory factor (TZF) 0.08 Archaeplastida
Zm00001e016582_P001 No alias mRNA-binding regulatory factor (TZF) 0.03 Archaeplastida
Zm00001e027132_P001 No alias mRNA-binding regulatory factor (TZF) 0.03 Archaeplastida
Zm00001e031293_P001 No alias mRNA-binding regulatory factor (TZF) 0.02 Archaeplastida
Zm00001e032199_P001 No alias mRNA-binding regulatory factor (TZF) 0.04 Archaeplastida
Zm00001e035805_P001 No alias mRNA-binding regulatory factor (TZF) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004451 isocitrate lyase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016833 oxo-acid-lyase activity IEP Neighborhood
BP GO:0019915 lipid storage IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 139 159
No external refs found!