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  5. GSVIVT01014289001

GSVIVT01014289001


Description : Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0000850 (SeedPlants) Phylogenetic Tree(s): OG_06_0000850_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014289001
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.03 Archaeplastida
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.04 Archaeplastida
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.04 Archaeplastida
AT1G20300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.08 Archaeplastida
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.07 Archaeplastida
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.08 Archaeplastida
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.04 Archaeplastida
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.08 Archaeplastida
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.04 Archaeplastida
LOC_Os01g05860.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
LOC_Os01g60010.1 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 Archaeplastida
LOC_Os03g51840.1 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.05 Archaeplastida
LOC_Os08g28180.1 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.06 Archaeplastida
LOC_Os09g37070.1 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.04 Archaeplastida
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_14956g0020 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.12 Archaeplastida
MA_387336g0010 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 Archaeplastida
MA_39587g0010 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.04 Archaeplastida
MA_929381g0010 No alias OTP43 mitochondrial RNA splicing factor 0.03 Archaeplastida
Solyc03g116540.1.1 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.04 Archaeplastida
Solyc03g117570.3.1 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.04 Archaeplastida
Solyc04g081950.4.1 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.04 Archaeplastida
Solyc05g008330.3.1 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.08 Archaeplastida
Zm00001e005553_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e006773_P001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.04 Archaeplastida
Zm00001e015034_P001 No alias Pentatricopeptide repeat-containing protein At3g04130,... 0.04 Archaeplastida
Zm00001e025816_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e026896_P001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.04 Archaeplastida
Zm00001e028873_P001 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.09 Archaeplastida
Zm00001e036197_P001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 424 456
IPR002885 Pentatricopeptide_repeat 161 184
IPR002885 Pentatricopeptide_repeat 224 268
IPR002885 Pentatricopeptide_repeat 290 339
IPR002885 Pentatricopeptide_repeat 372 404
No external refs found!