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  5. GSVIVT01014302001

GSVIVT01014302001


Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014302001
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.05 Archaeplastida
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AMTR_s00106p00142740 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AT1G69170 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.06 Archaeplastida
Gb_03922 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_15605 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_22010 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_38014 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g08070.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os04g46580.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os04g56170.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os07g32170.1 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_7789506g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c16_7490V3.1 No alias squamosa promoter binding protein-like 2 0.02 Archaeplastida
Pp3c4_6000V3.1 No alias squamosa promoter binding protein-like 8 0.03 Archaeplastida
Pp3c6_6900V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.12 Archaeplastida
Zm00001e003546_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e010124_P002 No alias transcription factor (SBP) 0.06 Archaeplastida
Zm00001e024385_P002 No alias transcription factor (SBP) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 84 157
No external refs found!