1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01014362001

GSVIVT01014362001


Description : Cell wall.cell wall proteins.expansins.alpha-type expansin


Gene families : OG0000024 (Archaeplastida) Phylogenetic Tree(s): OG0000024_tree ,
OG_05_0000028 (LandPlants) Phylogenetic Tree(s): OG_05_0000028_tree ,
OG_06_0000041 (SeedPlants) Phylogenetic Tree(s): OG_06_0000041_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014362001
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00270650 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AMTR_s00012p00230920 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AMTR_s00044p00061510 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AT1G69530 ATEXPA1, EXP1,... expansin A1 0.05 Archaeplastida
AT2G40610 EXPA8, ATHEXP... expansin A8 0.04 Archaeplastida
AT4G01630 ATHEXP ALPHA... expansin A17 0.02 Archaeplastida
AT5G39300 ATEXPA25,... expansin A25 0.02 Archaeplastida
Gb_07424 No alias alpha-class expansin 0.04 Archaeplastida
Gb_07437 No alias alpha-class expansin 0.03 Archaeplastida
Gb_09118 No alias alpha-class expansin 0.04 Archaeplastida
Gb_20678 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os01g60770.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os02g16839.1 No alias alpha-class expansin 0.08 Archaeplastida
MA_10020g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_100868g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_130258g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_275115g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_45587g0020 No alias alpha-class expansin 0.05 Archaeplastida
MA_91602g0010 No alias Expansin-A2 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Mp1g24230.1 No alias alpha-class expansin 0.02 Archaeplastida
Pp3c21_1850V3.1 No alias expansin A1 0.02 Archaeplastida
Pp3c8_870V3.1 No alias expansin A1 0.02 Archaeplastida
Solyc02g088100.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc07g063210.3.1 No alias alpha-class expansin 0.06 Archaeplastida
Solyc08g007780.3.1 No alias Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Solyc08g080060.4.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc10g084780.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e017221_P001 No alias alpha-class expansin 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 68 152
IPR007117 Expansin_CBD 163 241
No external refs found!