GSVIVT01014417001


Description : Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL/KDM1 lysine-specific demethylase


Gene families : OG0001739 (Archaeplastida) Phylogenetic Tree(s): OG0001739_tree ,
OG_05_0001723 (LandPlants) Phylogenetic Tree(s): OG_05_0001723_tree ,
OG_06_0001595 (SeedPlants) Phylogenetic Tree(s): OG_06_0001595_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014417001
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
Mp8g11530.1 No alias lysine-specific demethylase (LDL/KDM1) 0.02 Archaeplastida
Solyc07g063450.3.1 No alias lysine-specific demethylase (LDL/KDM1) 0.03 Archaeplastida
Solyc11g008320.3.1 No alias lysine-specific demethylase (LDL/KDM1) 0.03 Archaeplastida
Zm00001e007263_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.03 Archaeplastida
Zm00001e015890_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 120 530
No external refs found!