GSVIVT01014993001

Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase guanyl-nucleotide exchange factor (ARF-GEF) activities.BIG-type ARF-GEF factor

Gene families : OG0001057 (Archaeplastida) Phylogenetic Tree(s): OG0001057_tree ,
OG_05_0005925 (LandPlants) Phylogenetic Tree(s): OG_05_0005925_tree ,
OG_06_0007536 (SeedPlants) Phylogenetic Tree(s): OG_06_0007536_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01014993001
Cluster	HCCA: Cluster_106

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00145310	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.05	Archaeplastida
AMTR_s00041p00031550	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.04	Archaeplastida
AMTR_s00131p00043500	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.04	Archaeplastida
AT1G01960	EDA10	SEC7-like guanine nucleotide exchange family protein	0.11	Archaeplastida
AT3G43300	ATMIN7, BEN1	HOPM interactor 7	0.13	Archaeplastida
AT3G60860	No alias	SEC7-like guanine nucleotide exchange family protein	0.1	Archaeplastida
AT4G38200	No alias	SEC7-like guanine nucleotide exchange family protein	0.11	Archaeplastida
Cpa\|evm.model.tig00000852.23	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	Archaeplastida
Cre09.g390319	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.07	Archaeplastida
Gb_04048	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.07	Archaeplastida
Gb_07642	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.05	Archaeplastida
Gb_26513	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.07	Archaeplastida
LOC_Os03g14260.1	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.07	Archaeplastida
LOC_Os06g41780.2	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.04	Archaeplastida
LOC_Os07g37750.1	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.1	Archaeplastida
MA_10429864g0010	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.04	Archaeplastida
MA_20138g0010	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.07	Archaeplastida
MA_20563g0010	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.05	Archaeplastida
Mp7g11590.1	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.06	Archaeplastida
Mp8g18220.1	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.05	Archaeplastida
Pp3c11_12270V3.1	No alias	SEC7-like guanine nucleotide exchange family protein	0.05	Archaeplastida
Pp3c18_8290V3.1	No alias	HOPM interactor 7	0.06	Archaeplastida
Pp3c7_14180V3.1	No alias	SEC7-like guanine nucleotide exchange family protein	0.08	Archaeplastida
Smo173646	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	Archaeplastida
Smo85621	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.04	Archaeplastida
Solyc01g091460.3.1	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.08	Archaeplastida
Solyc01g112350.3.1	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.09	Archaeplastida
Solyc12g017830.3.1	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.11	Archaeplastida
Zm00001e001058_P001	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.08	Archaeplastida
Zm00001e010568_P001	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.1	Archaeplastida
Zm00001e025045_P001	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.04	Archaeplastida
Zm00001e035267_P004	No alias	No annotation	0.11	Archaeplastida
Zm00001e037574_P001	No alias	BIG-type ARF-GTPase guanyl-nucleotide exchange factor	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005085	guanyl-nucleotide exchange factor activity	None	Extended
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0032012	regulation of ARF protein signal transduction	IEA	Interproscan
BP	GO:0046578	regulation of Ras protein signal transduction	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0051056	regulation of small GTPase mediated signal transduction	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended
BP	GO:1902531	regulation of intracellular signal transduction	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0003689	DNA clamp loader activity	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
CC	GO:0005663	DNA replication factor C complex	IEP	Neighborhood
CC	GO:0005856	cytoskeleton	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Neighborhood
MF	GO:0008094	DNA-dependent ATPase activity	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009250	glucan biosynthetic process	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
BP	GO:0016197	endosomal transport	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016482	cytosolic transport	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
BP	GO:0016579	protein deubiquitination	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030173	integral component of Golgi membrane	IEP	Neighborhood
CC	GO:0030906	retromer, cargo-selective complex	IEP	Neighborhood
CC	GO:0031228	intrinsic component of Golgi membrane	IEP	Neighborhood
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Neighborhood
CC	GO:0031301	integral component of organelle membrane	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
MF	GO:0033170	protein-DNA loading ATPase activity	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
CC	GO:0070531	BRCA1-A complex	IEP	Neighborhood
CC	GO:0070552	BRISC complex	IEP	Neighborhood
BP	GO:0070646	protein modification by small protein removal	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000904	Sec7_dom	596	777
IPR015403	Sec7_C	1090	1172
IPR032629	DCB_dom	118	252
IPR032817	Mon2_C	1246	1311
IPR032691	Sec7_N	351	502

External Links

No external refs found!

GSVIVT01014993001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation