GSVIVT01015035001


Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree ,
OG_06_0002193 (SeedPlants) Phylogenetic Tree(s): OG_06_0002193_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015035001
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00034p00110140 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 Archaeplastida
AMTR_s00057p00141830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
AT3G61830 ARF18 auxin response factor 18 0.02 Archaeplastida
AT4G23980 ARF9 auxin response factor 9 0.01 Archaeplastida
Gb_02925 No alias transcription factor (ARF) 0.06 Archaeplastida
MA_10121946g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g12750.1 No alias transcription factor (ARF) 0.01 Archaeplastida
Smo117217 No alias RNA biosynthesis.transcriptional activation.B3... 0.01 Archaeplastida
Smo437944 No alias RNA biosynthesis.transcriptional activation.B3... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 748 837
IPR003340 B3_DNA-bd 126 227
IPR010525 Auxin_resp 252 334
No external refs found!