GSVIVT01015038001


Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0000245 (LandPlants) Phylogenetic Tree(s): OG_05_0000245_tree ,
OG_06_0001075 (SeedPlants) Phylogenetic Tree(s): OG_06_0001075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015038001
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00246870 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.05 Archaeplastida
AT1G31740 BGAL15 beta-galactosidase 15 0.03 Archaeplastida
AT1G45130 BGAL5 beta-galactosidase 5 0.03 Archaeplastida
AT2G04060 No alias glycosyl hydrolase family 35 protein 0.03 Archaeplastida
GSVIVT01005849001 No alias Beta-galactosidase 6 OS=Oryza sativa subsp. japonica 0.05 Archaeplastida
GSVIVT01006709001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.06 Archaeplastida
GSVIVT01008835001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.05 Archaeplastida
GSVIVT01015203001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.06 Archaeplastida
GSVIVT01021068001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.04 Archaeplastida
GSVIVT01024031001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.06 Archaeplastida
Gb_32359 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Gb_35384 No alias Beta-galactosidase 9 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_39826 No alias Beta-galactosidase 6 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Gb_39827 No alias Beta-galactosidase 8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os08g43570.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
LOC_Os10g18400.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
MA_11388g0010 No alias Beta-galactosidase 3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_87238g0010 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Solyc03g019890.3.1 No alias 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc07g042220.2.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc11g018490.3.1 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
Zm00001e019757_P001 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Zm00001e024694_P002 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004143 diacylglycerol kinase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR000922 Lectin_gal-bd_dom 758 835
IPR031330 Gly_Hdrlase_35_cat 47 350
No external refs found!