Description : RNA biosynthesis.transcriptional activation.Alfin-like transcription factor
Gene families : OG0000328 (Archaeplastida) Phylogenetic Tree(s): OG0000328_tree ,
OG_05_0000344 (LandPlants) Phylogenetic Tree(s): OG_05_0000344_tree ,
OG_06_0000605 (SeedPlants) Phylogenetic Tree(s): OG_06_0000605_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01015122001 | |
Cluster | HCCA: Cluster_152 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
LOC_Os02g35600.1 | No alias | Alfin-like transcription factor | 0.02 | Archaeplastida | |
LOC_Os07g41740.1 | No alias | Alfin-like transcription factor | 0.05 | Archaeplastida | |
MA_10430679g0010 | No alias | Alfin-like transcription factor | 0.03 | Archaeplastida | |
Pp3c6_24360V3.1 | No alias | alfin-like 3 | 0.03 | Archaeplastida | |
Solyc01g102760.3.1 | No alias | Alfin-like transcription factor | 0.04 | Archaeplastida | |
Zm00001e019021_P004 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
Zm00001e021294_P001 | No alias | Alfin-like transcription factor | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | Interproscan |
MF | GO:0042393 | histone binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003677 | DNA binding | IEP | Neighborhood |
MF | GO:0003690 | double-stranded DNA binding | IEP | Neighborhood |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Neighborhood |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Neighborhood |
CC | GO:0005694 | chromosome | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
BP | GO:0006298 | mismatch repair | IEP | Neighborhood |
BP | GO:0006334 | nucleosome assembly | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006996 | organelle organization | IEP | Neighborhood |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
MF | GO:0008483 | transaminase activity | IEP | Neighborhood |
BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
MF | GO:0016597 | amino acid binding | IEP | Neighborhood |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Neighborhood |
MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Neighborhood |
MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
MF | GO:0030983 | mismatched DNA binding | IEP | Neighborhood |
CC | GO:0031011 | Ino80 complex | IEP | Neighborhood |
MF | GO:0031406 | carboxylic acid binding | IEP | Neighborhood |
CC | GO:0033202 | DNA helicase complex | IEP | Neighborhood |
MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034728 | nucleosome organization | IEP | Neighborhood |
MF | GO:0043177 | organic acid binding | IEP | Neighborhood |
CC | GO:0044427 | chromosomal part | IEP | Neighborhood |
CC | GO:0044454 | nuclear chromosome part | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
MF | GO:0061505 | DNA topoisomerase II activity | IEP | Neighborhood |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Neighborhood |
CC | GO:0070603 | SWI/SNF superfamily-type complex | IEP | Neighborhood |
BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Neighborhood |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
CC | GO:0097346 | INO80-type complex | IEP | Neighborhood |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
CC | GO:1904949 | ATPase complex | IEP | Neighborhood |
No external refs found! |