GSVIVT01015210001


Description : WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana


Gene families : OG0003917 (Archaeplastida) Phylogenetic Tree(s): OG0003917_tree ,
OG_05_0003953 (LandPlants) Phylogenetic Tree(s): OG_05_0003953_tree ,
OG_06_0004561 (SeedPlants) Phylogenetic Tree(s): OG_06_0004561_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015210001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00164390 evm_27.TU.AmTr_v1... Histone-binding protein MSI1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT2G19540 No alias Transducin family protein / WD-40 repeat family protein 0.04 Archaeplastida
Cpa|evm.model.tig00001493.9 No alias No description available 0.04 Archaeplastida
Cre17.g724850 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.09 Archaeplastida
LOC_Os12g03822.1 No alias Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.07 Archaeplastida
MA_10425957g0010 No alias Histone-binding protein MSI1 OS=Arabidopsis thaliana... 0.1 Archaeplastida
Mp4g21540.1 No alias Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.05 Archaeplastida
Pp3c12_16950V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.07 Archaeplastida
Solyc07g039200.4.1 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis... 0.12 Archaeplastida
Zm00001e020846_P004 No alias Histone-binding protein MSI1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e027495_P001 No alias WD-40 repeat-containing protein MSI4 OS=Arabidopsis... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 46 112
IPR001680 WD40_repeat 271 304
IPR001680 WD40_repeat 312 346
IPR001680 WD40_repeat 360 395
No external refs found!