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  5. GSVIVT01015331001

GSVIVT01015331001


Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component


Gene families : OG0001098 (Archaeplastida) Phylogenetic Tree(s): OG0001098_tree ,
OG_05_0001090 (LandPlants) Phylogenetic Tree(s): OG_05_0001090_tree ,
OG_06_0003176 (SeedPlants) Phylogenetic Tree(s): OG_06_0003176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015331001
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00043140 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00062p00145630 evm_27.TU.AmTr_v1... CRS2-associated factor 2, mitochondrial OS=Oryza sativa... 0.02 Archaeplastida
AT2G20020 ATCAF1, CAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.09 Archaeplastida
Gb_32774 No alias CRS2-associated factor 2, chloroplastic OS=Arabidopsis... 0.03 Archaeplastida
MA_54539g0010 No alias CRS2-associated factor 2, mitochondrial OS=Arabidopsis... 0.03 Archaeplastida
MA_75293g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Pp3c23_16010V3.1 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.06 Archaeplastida
Pp3c8_14060V3.1 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.02 Archaeplastida
Solyc05g018240.4.1 No alias component CAF of CRS2-CAF plastidial RNA splicing factor... 0.08 Archaeplastida
Solyc11g066300.3.1 No alias component CAF of CRS2-CAF plastidial RNA splicing factor... 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009975 cyclase activity IEP Neighborhood
MF GO:0009976 tocopherol cyclase activity IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 244 327
IPR001890 RNA-binding_CRM 363 445
No external refs found!