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  5. GSVIVT01015458001

GSVIVT01015458001


Description : RNA biosynthesis.transcriptional repression.LUG transcriptional co-repressor


Gene families : OG0000691 (Archaeplastida) Phylogenetic Tree(s): OG0000691_tree ,
OG_05_0000885 (LandPlants) Phylogenetic Tree(s): OG_05_0000885_tree ,
OG_06_0001501 (SeedPlants) Phylogenetic Tree(s): OG_06_0001501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015458001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
Gb_02946 No alias transcriptional co-repressor (LUG) 0.03 Archaeplastida
Gb_10345 No alias transcriptional co-repressor (LUG) 0.04 Archaeplastida
Gb_10347 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os01g42260.1 No alias transcriptional co-repressor (LUG) 0.05 Archaeplastida
Mp1g15050.1 No alias transcriptional co-repressor (LUG) 0.02 Archaeplastida
Pp3c1_3700V3.1 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.02 Archaeplastida
Pp3c2_31710V3.1 No alias No annotation 0.03 Archaeplastida
Smo79275 No alias RNA biosynthesis.transcriptional repression.LUG... 0.03 Archaeplastida
Solyc02g078000.2.1 No alias transcriptional co-repressor (LUG) 0.03 Archaeplastida
Solyc06g065640.3.1 No alias transcriptional co-repressor (LUG) 0.04 Archaeplastida
Zm00001e020658_P005 No alias transcriptional co-repressor (LUG) 0.04 Archaeplastida
Zm00001e020659_P003 No alias transcriptional co-repressor (LUG) 0.03 Archaeplastida
Zm00001e027845_P004 No alias transcriptional co-repressor (LUG) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003883 CTP synthase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004725 protein tyrosine phosphatase activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR006594 LisH 10 36
IPR001680 WD40_repeat 834 871
IPR001680 WD40_repeat 629 661
IPR001680 WD40_repeat 585 618
IPR001680 WD40_repeat 750 783
IPR001680 WD40_repeat 669 704
No external refs found!