1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01015641001

GSVIVT01015641001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0004419 (LandPlants) Phylogenetic Tree(s): OG_05_0004419_tree ,
OG_06_0002756 (SeedPlants) Phylogenetic Tree(s): OG_06_0002756_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015641001
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AT2G24840 AGL61, DIA AGAMOUS-like 61 0.04 Archaeplastida
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
GSVIVT01010221001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01022182001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.09 Archaeplastida
MA_10289256g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_15122g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_20180g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_333471g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_9284799g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Mp4g12490.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Pp3c12_22890V3.1 No alias AGAMOUS-like 66 0.01 Archaeplastida
Pp3c14_22180V3.1 No alias AGAMOUS-like 104 0.02 Archaeplastida
Pp3c17_13070V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Solyc03g006830.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002487 TF_Kbox 92 170
IPR002100 TF_MADSbox 10 57
No external refs found!