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  5. GSVIVT01016056001

GSVIVT01016056001


Description : Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0000889 (LandPlants) Phylogenetic Tree(s): OG_05_0000889_tree ,
OG_06_0000875 (SeedPlants) Phylogenetic Tree(s): OG_06_0000875_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016056001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00103340 evm_27.TU.AmTr_v1... ATP-dependent RNA helicase DEAH12, chloroplastic... 0.03 Archaeplastida
AMTR_s00129p00115010 evm_27.TU.AmTr_v1... Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT2G21420 No alias IBR domain containing protein 0.04 Archaeplastida
AT5G37560 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Pp3c3_13290V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c5_8660V3.1 No alias zinc finger (C3HC4-type RING finger) family protein 0.02 Archaeplastida
Solyc01g110100.4.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004451 isocitrate lyase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0016833 oxo-acid-lyase activity IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 257 311
IPR002867 IBR_dom 177 242
No external refs found!