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  5. GSVIVT01016441001

GSVIVT01016441001


Description : Photosystem II protein D1 OS=Vitis vinifera


Gene families : OG0001158 (Archaeplastida) Phylogenetic Tree(s): OG0001158_tree ,
OG_05_0000799 (LandPlants) Phylogenetic Tree(s): OG_05_0000799_tree ,
OG_06_0000883 (SeedPlants) Phylogenetic Tree(s): OG_06_0000883_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016441001
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00270980 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.06 Archaeplastida
AMTR_s00071p00011330 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.06 Archaeplastida
AMTR_s00172p00027480 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.06 Archaeplastida
AMTR_s00172p00030370 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.06 Archaeplastida
AMTR_s00172p00038240 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.06 Archaeplastida
AMTR_s00172p00040120 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.06 Archaeplastida
AMTR_s00390p00002060 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.06 Archaeplastida
ATCG00020 PSBA photosystem II reaction center protein A 0.08 Archaeplastida
Gb_03955 No alias Photosystem II protein D1 OS=Cryptomeria japonica... 0.09 Archaeplastida
Gb_09035 No alias Photosystem II protein D1 OS=Cryptomeria japonica... 0.09 Archaeplastida
Gb_18604 No alias Photosystem II protein D1 OS=Adiantum capillus-veneris... 0.09 Archaeplastida
Gb_20129 No alias Photosystem II protein D1 OS=Zygnema circumcarinatum... 0.06 Archaeplastida
Gb_23102 No alias no description available(sp|q85bh5|psba_antag : 432.0) 0.04 Archaeplastida
Gb_26289 No alias no description available(sp|q85bh5|psba_antag : 489.0) 0.04 Archaeplastida
LOC_Os10g21192.1 No alias component PsbA/D1 of PS-II reaction center complex 0.09 Archaeplastida
LOC_Os10g39880.1 No alias Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.01 Archaeplastida
LOC_Os12g19580.1 No alias Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.09 Archaeplastida
Mp1g09910.1 No alias Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.07 Archaeplastida
Mp3g12650.1 No alias Photosystem II protein D1 OS=Marchantia polymorpha... 0.07 Archaeplastida
Mp5g10950.1 No alias No annotation 0.06 Archaeplastida
Smo139195 No alias Photosystem II protein D1 OS=Phalaenopsis aphrodite... 0.06 Archaeplastida
Smo236852 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.07 Archaeplastida
Solyc00g500130.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.08 Archaeplastida
Solyc00g500200.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.08 Archaeplastida
Solyc00g500296.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.08 Archaeplastida
Solyc00g500329.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.08 Archaeplastida
Solyc02g021290.1.1 No alias Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.04 Archaeplastida
Solyc05g016120.2.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Solyc11g030830.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc12g039030.1.1 No alias Photosystem II protein D1 OS=Oltmannsiellopsis viridis... 0.04 Archaeplastida
Zm00001e036844_P001 No alias Photosystem II protein D1 OS=Zea mays... 0.05 Archaeplastida
Zm00001e042113_P001 No alias Photosystem II protein D1 OS=Zea mays... 0.08 Archaeplastida
Zm00001e042176_P001 No alias component PsbA/D1 of PS-II reaction center complex 0.08 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009123 nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009150 purine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
CC GO:0009512 cytochrome b6f complex IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016168 chlorophyll binding IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046034 ATP metabolic process IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 177 303
IPR000484 Photo_RC_L/M 34 178
No external refs found!