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  5. AMTR_s00039p00172240

AMTR_s00039p00172240 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00039.132

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000113 (SeedPlants) Phylogenetic Tree(s): OG_06_0000113_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00039p00172240
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00225650 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AT1G35515 MYB8, HOS10 high response to osmotic stress 10 0.05 Archaeplastida
AT1G74080 ATMYB122, MYB122 myb domain protein 122 0.04 Archaeplastida
AT2G47460 ATMYB12, PFG1, MYB12 myb domain protein 12 0.04 Archaeplastida
AT3G13890 MYB26, ATMYB26, MS35 myb domain protein 26 0.02 Archaeplastida
AT3G46130 ATMYB48-1,... myb domain protein 48 0.04 Archaeplastida
AT4G17785 MYB39 myb domain protein 39 0.03 Archaeplastida
AT5G14340 AtMYB40, MYB40 myb domain protein 40 0.03 Archaeplastida
AT5G14750 MYB66, ATMYB66, WER, WER1 myb domain protein 66 0.02 Archaeplastida
AT5G26660 MYB86, ATMYB86 myb domain protein 86 0.03 Archaeplastida
AT5G52260 MYB19, AtMYB19 myb domain protein 19 0.05 Archaeplastida
GSVIVT01012778001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01026481001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01028171001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Gb_22064 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_23308 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_34464 No alias Transcription factor GAMYB OS=Oryza sativa subsp.... 0.03 Archaeplastida
Gb_35539 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os01g07450.1 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os01g45090.1 No alias transcription factor (MYB) 0.05 Archaeplastida
LOC_Os01g59660.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os01g74410.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os02g02370.1 No alias transcription factor (MYB) 0.05 Archaeplastida
LOC_Os02g54520.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os03g19120.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os06g10350.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os09g26170.1 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_10048467g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_10426901g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10430220g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_10431212g0010 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_10433651g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_1261g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_136123g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_15687g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_158319g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_2026g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_21440g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_246817g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_278282g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_323706g0010 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_3665g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_446064g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_45091g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_51173g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_53373g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_6285g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_8147g0020 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_83918g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_93127g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_95012g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c16_9970V3.1 No alias myb domain protein 106 0.02 Archaeplastida
Pp3c6_24650V3.1 No alias myb domain protein 109 0.02 Archaeplastida
Pp3c7_21220V3.1 No alias myb domain protein 105 0.04 Archaeplastida
Solyc01g010910.2.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc01g057910.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc02g079280.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc02g089190.2.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc03g093890.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc03g116100.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc03g119370.2.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc04g056310.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc05g014290.4.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc05g053150.2.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc06g074910.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc06g075660.4.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc07g006750.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc07g054840.4.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc08g076710.3.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc09g008250.4.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc09g090790.3.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc10g005240.3.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc10g008700.3.1 No alias No annotation 0.05 Archaeplastida
Solyc10g081490.2.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc11g011050.2.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc12g005640.2.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc12g099130.2.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e001803_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e009831_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e009849_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e012497_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e013452_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e018186_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e020371_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e022450_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e024037_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e024682_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e029816_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e030775_P002 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e034214_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e037956_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e038964_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e041547_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e041551_P001 No alias transcription factor (MYB) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 17 64
IPR001005 SANT/Myb 71 114
No external refs found!