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  5. GSVIVT01016667001

GSVIVT01016667001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016667001
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00230630 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.08 Archaeplastida
AMTR_s00033p00227850 evm_27.TU.AmTr_v1... Probable pectinesterase/pectinesterase inhibitor 21... 0.03 Archaeplastida
AMTR_s00040p00188020 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.07 Archaeplastida
AMTR_s00071p00109420 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00129p00028250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
AT1G02810 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT1G53830 ATPME2, PME2 pectin methylesterase 2 0.04 Archaeplastida
AT1G53840 PME1, ATPME1 pectin methylesterase 1 0.03 Archaeplastida
AT2G26450 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT2G45220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT3G10710 RHS12 root hair specific 12 0.03 Archaeplastida
AT3G43270 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT3G47400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.08 Archaeplastida
AT3G59010 PME61 pectin methylesterase 61 0.06 Archaeplastida
AT4G33220 PME44, ATPME44 pectin methylesterase 44 0.04 Archaeplastida
AT4G33230 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT5G04970 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT5G51490 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT5G51500 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT5G53370 ATPMEPCRF, PMEPCRF pectin methylesterase PCR fragment F 0.04 Archaeplastida
GSVIVT01017687001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01027653001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01028040001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01028265001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01031165001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01038546001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_03174 No alias pectin methylesterase 0.03 Archaeplastida
Gb_10522 No alias pectin methylesterase 0.03 Archaeplastida
Gb_10523 No alias pectin methylesterase 0.03 Archaeplastida
Gb_21388 No alias pectin methylesterase 0.03 Archaeplastida
Gb_24214 No alias pectin methylesterase 0.03 Archaeplastida
Gb_36012 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g13320.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g15039.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g21034.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g57854.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g65790.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os04g38560.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os04g54850.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os06g09340.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os07g47830.1 No alias pectin methylesterase 0.09 Archaeplastida
LOC_Os08g34910.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os09g26360.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10377619g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10434786g0010 No alias No annotation 0.03 Archaeplastida
MA_10435891g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_18093g0010 No alias Pectinesterase 2.1 OS=Solanum lycopersicum... 0.03 Archaeplastida
MA_26888g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_648837g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_96515g0010 No alias pectin methylesterase 0.03 Archaeplastida
Mp6g15150.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp8g00060.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_25030V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c15_12280V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c17_6440V3.1 No alias pectin methylesterase PCR fragment F 0.05 Archaeplastida
Pp3c18_22120V3.1 No alias pectin methylesterase PCR fragment F 0.03 Archaeplastida
Pp3c21_11740V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Pp3c26_2170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c4_22420V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
Pp3c8_3840V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Solyc01g057220.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc01g066360.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc01g066420.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc02g014300.2.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc02g080200.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc03g078090.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc03g083840.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc03g083870.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc03g123620.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc07g017600.3.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc07g064190.3.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc09g075350.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc11g005770.2.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc12g099410.2.1 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e004056_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e009863_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e011069_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e017515_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e019069_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e022184_P001 No alias pectin methylesterase 0.05 Archaeplastida
Zm00001e026790_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e034231_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e035838_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e036264_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e041006_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e041757_P001 No alias pectin methylesterase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008378 galactosyltransferase activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 1 245
IPR000070 Pectinesterase_cat 363 655
No external refs found!