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  5. GSVIVT01016742001

GSVIVT01016742001


Description : Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.XPO3/XPOT export karyopherin


Gene families : OG0005308 (Archaeplastida) Phylogenetic Tree(s): OG0005308_tree ,
OG_05_0007826 (LandPlants) Phylogenetic Tree(s): OG_05_0007826_tree ,
OG_06_0009040 (SeedPlants) Phylogenetic Tree(s): OG_06_0009040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016742001
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AT1G72560 PSD ARM repeat superfamily protein 0.11 Archaeplastida
Cpa|evm.model.tig00001027.18 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.04 Archaeplastida
Cre12.g496200 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 Archaeplastida
Gb_29796 No alias XPO3/XPOT nucleocytoplasmic export karyopherin 0.04 Archaeplastida
LOC_Os07g42180.1 No alias XPO3/XPOT nucleocytoplasmic export karyopherin 0.04 Archaeplastida
MA_127776g0010 No alias XPO3/XPOT nucleocytoplasmic export karyopherin 0.05 Archaeplastida
Mp1g13760.1 No alias XPO3/XPOT nucleocytoplasmic export karyopherin 0.03 Archaeplastida
Pp3c12_21910V3.1 No alias ARM repeat superfamily protein 0.07 Archaeplastida
Solyc03g122370.4.1 No alias XPO3/XPOT nucleocytoplasmic export karyopherin 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006382 adenosine to inosine editing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0030906 retromer, cargo-selective complex IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013598 Exportin-1/Importin-b-like 110 262
No external refs found!