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  5. AMTR_s00039p00189000

AMTR_s00039p00189000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00039.151

Description : Cell wall.pectin.modification and degradation.pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00039p00189000
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00173370 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT4G13210 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.02 Archaeplastida
AT4G24780 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G04310 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01033671001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
Gb_02248 No alias pectate lyase 0.09 Archaeplastida
Gb_19802 No alias pectate lyase 0.05 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.02 Archaeplastida
LOC_Os10g31910.1 No alias pectate lyase 0.07 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.06 Archaeplastida
MA_10205415g0010 No alias pectate lyase 0.05 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.06 Archaeplastida
MA_10428603g0020 No alias pectate lyase 0.02 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.05 Archaeplastida
MA_10437227g0010 No alias pectate lyase 0.08 Archaeplastida
MA_1164682g0010 No alias pectate lyase 0.05 Archaeplastida
MA_170547g0010 No alias pectate lyase 0.07 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.05 Archaeplastida
MA_476625g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_62112g0010 No alias pectate lyase 0.03 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.03 Archaeplastida
MA_91467g0010 No alias pectate lyase 0.05 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.05 Archaeplastida
MA_956526g0010 No alias pectate lyase 0.03 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.05 Archaeplastida
Mp3g01000.1 No alias pectate lyase 0.03 Archaeplastida
Mp8g00770.1 No alias pectate lyase 0.02 Archaeplastida
Mp8g10190.1 No alias pectate lyase 0.03 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_10180V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_10470V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Solyc02g067450.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc02g080910.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc03g071570.3.1 No alias pectate lyase 0.02 Archaeplastida
Solyc06g071840.3.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc06g083580.4.1 No alias pectate lyase 0.08 Archaeplastida
Solyc09g008380.3.1 No alias pectate lyase 0.04 Archaeplastida
Solyc09g061890.3.1 No alias pectate lyase 0.04 Archaeplastida
Zm00001e004654_P002 No alias pectate lyase 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 183 374
No external refs found!