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  5. GSVIVT01017297001

GSVIVT01017297001


Description : Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana


Gene families : OG0010975 (Archaeplastida) Phylogenetic Tree(s): OG0010975_tree ,
OG_05_0010924 (LandPlants) Phylogenetic Tree(s): OG_05_0010924_tree ,
OG_06_0010866 (SeedPlants) Phylogenetic Tree(s): OG_06_0010866_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017297001
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00216810 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00104p00122950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52620... 0.08 Archaeplastida
AT1G52620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Archaeplastida
Gb_26665 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.06 Archaeplastida
LOC_Os11g04295.1 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.05 Archaeplastida
Solyc03g116560.1.1 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.14 Archaeplastida
Zm00001e024077_P001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 461 489
IPR002885 Pentatricopeptide_repeat 323 372
IPR002885 Pentatricopeptide_repeat 393 442
IPR002885 Pentatricopeptide_repeat 498 547
IPR002885 Pentatricopeptide_repeat 218 267
IPR002885 Pentatricopeptide_repeat 190 209
IPR002885 Pentatricopeptide_repeat 292 321
IPR002885 Pentatricopeptide_repeat 133 152
No external refs found!