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  5. GSVIVT01017302001

GSVIVT01017302001


Description : Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000273 (LandPlants) Phylogenetic Tree(s): OG_05_0000273_tree ,
OG_06_0000208 (SeedPlants) Phylogenetic Tree(s): OG_06_0000208_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017302001
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00074p00182020 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00090p00047840 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AT1G23460 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G56710 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G70500 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT1G80170 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G14650 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01004006001 No alias Polygalacturonase OS=Prunus persica 0.03 Archaeplastida
GSVIVT01004007001 No alias Polygalacturonase OS=Prunus persica 0.04 Archaeplastida
GSVIVT01008061001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01008062001 No alias Polygalacturonase OS=Juniperus ashei 0.03 Archaeplastida
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01028132001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01033360001 No alias Cell wall.pectin.modification and... 0.04 Archaeplastida
GSVIVT01038241001 No alias Polygalacturonase OS=Prunus persica 0.05 Archaeplastida
GSVIVT01038243001 No alias Polygalacturonase OS=Prunus persica 0.04 Archaeplastida
Gb_05788 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 Archaeplastida
Gb_07779 No alias Polygalacturonase OS=Actinidia deliciosa... 0.06 Archaeplastida
Gb_27331 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
LOC_Os01g43490.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
LOC_Os01g44970.1 No alias polygalacturonase (PGX1) 0.04 Archaeplastida
LOC_Os03g59330.1 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
LOC_Os05g20020.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10862g0010 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida
MA_427851g0010 No alias Polygalacturonase OS=Cryptomeria japonica... 0.03 Archaeplastida
MA_9231294g0010 No alias No annotation 0.07 Archaeplastida
Pp3c23_3890V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo78038 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
Solyc01g100980.4.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc02g067630.3.1 No alias Polygalacturonase OS=Prunus persica... 0.05 Archaeplastida
Solyc02g067640.3.1 No alias Polygalacturonase OS=Prunus persica... 0.05 Archaeplastida
Solyc04g015530.3.1 No alias polygalacturonase (QRT2) 0.02 Archaeplastida
Solyc04g025440.3.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida
Solyc08g014540.1.1 No alias Polygalacturonase OS=Prunus persica... 0.05 Archaeplastida
Solyc08g014560.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc12g009420.3.1 No alias Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc12g019120.2.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g019180.2.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc12g096750.2.1 No alias Polygalacturonase OS=Prunus persica... 0.05 Archaeplastida
Zm00001e013553_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e017465_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e017565_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e019002_P001 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
Zm00001e020373_P001 No alias polygalacturonase (PGX1) 0.03 Archaeplastida
Zm00001e032294_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 54 365
No external refs found!