1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01017660001

GSVIVT01017660001


Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.alpha-L-arabinofuranosidase activities.bifunctional BXL-type alpha-L-arabinofuranosidase and beta-D-xylosidase


Gene families : OG0000435 (Archaeplastida) Phylogenetic Tree(s): OG0000435_tree ,
OG_05_0000257 (LandPlants) Phylogenetic Tree(s): OG_05_0000257_tree ,
OG_06_0004246 (SeedPlants) Phylogenetic Tree(s): OG_06_0004246_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017660001
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00188970 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 Archaeplastida
AMTR_s00057p00049120 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.01 Archaeplastida
AMTR_s00068p00088730 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.01 Archaeplastida
AT1G78060 No alias Glycosyl hydrolase family protein 0.04 Archaeplastida
AT3G19620 No alias Glycosyl hydrolase family protein 0.02 Archaeplastida
GSVIVT01017658001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.01 Archaeplastida
GSVIVT01017659001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.01 Archaeplastida
LOC_Os01g19220.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.02 Archaeplastida
LOC_Os04g54810.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.01 Archaeplastida
MA_10436568g0020 No alias bifunctional alpha-L-arabinofuranosidase and... 0.03 Archaeplastida
MA_791061g0010 No alias bifunctional alpha-L-arabinofuranosidase and... 0.02 Archaeplastida
Solyc01g079570.3.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.02 Archaeplastida
Zm00001e026163_P001 No alias no hits & (original description: none) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Neighborhood
MF GO:0004620 phospholipase activity IEP Neighborhood
MF GO:0004629 phospholipase C activity IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR002772 Glyco_hydro_3_C 401 629
IPR026891 Fn3-like 662 730
IPR001764 Glyco_hydro_3_N 137 358
No external refs found!