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  5. GSVIVT01017696001

GSVIVT01017696001


Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter


Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0024548 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0023419 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017696001
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00254310 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 Archaeplastida
AMTR_s00018p00193700 evm_27.TU.AmTr_v1... ABC transporter B family member 14 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00018p00193820 evm_27.TU.AmTr_v1... ABC transporter B family member 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00045p00108620 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 Archaeplastida
AMTR_s00045p00109940 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.05 Archaeplastida
AT3G28380 PGP17 P-glycoprotein 17 0.04 Archaeplastida
AT3G55320 PGP20 P-glycoprotein 20 0.07 Archaeplastida
AT4G01820 PGP3, MDR3 P-glycoprotein 3 0.03 Archaeplastida
GSVIVT01015306001 No alias Solute transport.primary active transport.ABC... 0.04 Archaeplastida
GSVIVT01032578001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Gb_10211 No alias subfamily ABCB transporter 0.04 Archaeplastida
Gb_10215 No alias subfamily ABCB transporter 0.02 Archaeplastida
Gb_10216 No alias subfamily ABCB transporter 0.03 Archaeplastida
Gb_36497 No alias subfamily ABCB transporter 0.06 Archaeplastida
MA_10432169g0010 No alias subfamily ABCB transporter 0.05 Archaeplastida
MA_10432922g0010 No alias subfamily ABCB transporter 0.02 Archaeplastida
MA_83806g0010 No alias subfamily ABCB transporter 0.03 Archaeplastida
Mp7g16060.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
Pp3c17_16450V3.1 No alias ATP binding cassette subfamily B19 0.04 Archaeplastida
Pp3c1_34680V3.1 No alias P-glycoprotein 10 0.02 Archaeplastida
Solyc02g087410.4.1 No alias subfamily ABCB transporter 0.05 Archaeplastida
Solyc03g005860.4.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
Solyc05g013890.3.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
Zm00001e008749_P001 No alias subfamily ABCB transporter 0.04 Archaeplastida
Zm00001e041087_P002 No alias subfamily ABCB transporter 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 578 730
IPR011527 ABC1_TM_dom 1 274
IPR011527 ABC1_TM_dom 1685 1953
IPR011527 ABC1_TM_dom 1095 1367
IPR003439 ABC_transporter-like 343 388
IPR003439 ABC_transporter-like 1438 1585
IPR003439 ABC_transporter-like 2027 2175
IPR003439 ABC_transporter-like 801 926
IPR003439 ABC_transporter-like 401 451
No external refs found!