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  5. GSVIVT01017719001

GSVIVT01017719001


Description : DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica


Gene families : OG0006573 (Archaeplastida) Phylogenetic Tree(s): OG0006573_tree ,
OG_05_0006254 (LandPlants) Phylogenetic Tree(s): OG_05_0006254_tree ,
OG_06_0008567 (SeedPlants) Phylogenetic Tree(s): OG_06_0008567_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017719001
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00149950 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.02 Archaeplastida
AT3G06980 No alias DEA(D/H)-box RNA helicase family protein 0.16 Archaeplastida
Cre10.g436650 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_19265 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.07 Archaeplastida
LOC_Os03g01830.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.12 Archaeplastida
MA_10437125g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
Mp8g11020.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis... 0.13 Archaeplastida
Pp3c13_13090V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.11 Archaeplastida
Smo142751 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.04 Archaeplastida
Smo403724 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.05 Archaeplastida
Solyc11g045180.3.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e039095_P002 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006787 porphyrin-containing compound catabolic process IEP Neighborhood
BP GO:0006788 heme oxidation IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015996 chlorophyll catabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033015 tetrapyrrole catabolic process IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0046149 pigment catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0047746 chlorophyllase activity IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 489 605
IPR011545 DEAD/DEAH_box_helicase_dom 266 436
No external refs found!