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  5. GSVIVT01017733001

GSVIVT01017733001


Description : Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana


Gene families : OG0008888 (Archaeplastida) Phylogenetic Tree(s): OG0008888_tree ,
OG_05_0008600 (LandPlants) Phylogenetic Tree(s): OG_05_0008600_tree ,
OG_06_0007808 (SeedPlants) Phylogenetic Tree(s): OG_06_0007808_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017733001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Gb_36884 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.03 Archaeplastida
Solyc01g080720.4.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 Archaeplastida
Zm00001e033217_P004 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 368 416
IPR002885 Pentatricopeptide_repeat 472 521
IPR002885 Pentatricopeptide_repeat 157 206
IPR002885 Pentatricopeptide_repeat 539 568
IPR002885 Pentatricopeptide_repeat 433 464
IPR002885 Pentatricopeptide_repeat 225 255
IPR002885 Pentatricopeptide_repeat 92 115
IPR002885 Pentatricopeptide_repeat 336 365
IPR002885 Pentatricopeptide_repeat 127 154
IPR002885 Pentatricopeptide_repeat 581 610
IPR002885 Pentatricopeptide_repeat 266 295
IPR002885 Pentatricopeptide_repeat 65 84
No external refs found!