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  5. GSVIVT01017774001

GSVIVT01017774001


Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0000421 (Archaeplastida) Phylogenetic Tree(s): OG0000421_tree ,
OG_05_0006096 (LandPlants) Phylogenetic Tree(s): OG_05_0006096_tree ,
OG_06_0003875 (SeedPlants) Phylogenetic Tree(s): OG_06_0003875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017774001
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT5G16540 ZFN3 zinc finger nuclease 3 0.03 Archaeplastida
Mp2g10620.1 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
Solyc06g054620.4.1 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Zm00001e025565_P002 No alias C3H zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 353 376
IPR000571 Znf_CCCH 143 168
IPR000571 Znf_CCCH 51 76
IPR000571 Znf_CCCH 98 122
IPR000571 Znf_CCCH 305 330
No external refs found!