GSVIVT01017989001

Description : RNA processing.organelle machineries.RNA editing.mitochondrial RNA editing.MEF11 RNA editing factor

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000064 (SeedPlants) Phylogenetic Tree(s): OG_06_0000064_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01017989001
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00062590	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
AMTR_s00031p00067070	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.03	Archaeplastida
AMTR_s00038p00071780	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g26540...	0.03	Archaeplastida
AMTR_s00059p00167980	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g33990...	0.04	Archaeplastida
AMTR_s00084p00089150	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g63370,...	0.04	Archaeplastida
AT1G04840	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
AT1G06140	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT1G13410	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	Archaeplastida
AT1G17630	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.06	Archaeplastida
AT1G69350	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	Archaeplastida
AT1G71490	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
AT1G77010	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT2G01510	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT2G02980	OTP85	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT2G03880	REME1	Pentatricopeptide repeat (PPR) superfamily protein	0.07	Archaeplastida
AT2G33680	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT2G39620	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT3G25060	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT3G49142	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT3G53360	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Archaeplastida
AT3G63370	OTP86	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT4G13650	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.07	Archaeplastida
AT4G33170	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	Archaeplastida
AT4G38010	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.05	Archaeplastida
AT5G08305	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.08	Archaeplastida
AT5G13230	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Archaeplastida
AT5G40410	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	Archaeplastida
GSVIVT01022516001	No alias	Pentatricopeptide repeat-containing protein At5g06540...	0.06	Archaeplastida
Gb_03572	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_09797	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
Gb_10113	No alias	Pentatricopeptide repeat-containing protein At1g25360...	0.04	Archaeplastida
Gb_10726	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_11545	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_15874	No alias	RNA editing factor (ECB2/VAC1)	0.03	Archaeplastida
Gb_16664	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Gb_18166	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_18600	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.05	Archaeplastida
Gb_18914	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
Gb_23124	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
Gb_26581	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_28390	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
Gb_33210	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_33718	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_33726	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_33959	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_35108	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
Gb_35599	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.04	Archaeplastida
Gb_35645	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.04	Archaeplastida
Gb_36806	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_37820	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
LOC_Os01g08120.1	No alias	RNA editing factor (OTP81)	0.1	Archaeplastida
LOC_Os01g40720.1	No alias	RNA editing factor (MEF7)	0.05	Archaeplastida
LOC_Os01g55960.1	No alias	Pentatricopeptide repeat-containing protein At5g56310...	0.04	Archaeplastida
LOC_Os02g06880.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.05	Archaeplastida
LOC_Os02g07050.1	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.07	Archaeplastida
LOC_Os03g13230.1	No alias	Pentatricopeptide repeat-containing protein At4g37170...	0.06	Archaeplastida
LOC_Os03g63510.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
LOC_Os04g35650.1	No alias	Pentatricopeptide repeat-containing protein At3g26540...	0.04	Archaeplastida
LOC_Os05g05490.1	No alias	Pentatricopeptide repeat-containing protein At3g05340...	0.04	Archaeplastida
LOC_Os05g30710.1	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.05	Archaeplastida
LOC_Os05g50460.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
LOC_Os06g12510.1	No alias	Pentatricopeptide repeat-containing protein At5g15300...	0.05	Archaeplastida
LOC_Os07g10400.1	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
LOC_Os07g44299.1	No alias	Pentatricopeptide repeat-containing protein At2g29760,...	0.06	Archaeplastida
LOC_Os11g14980.1	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.06	Archaeplastida
LOC_Os12g06070.1	No alias	Pentatricopeptide repeat-containing protein At5g04780,...	0.03	Archaeplastida
LOC_Os12g13110.1	No alias	Pentatricopeptide repeat-containing protein At2g22410,...	0.03	Archaeplastida
LOC_Os12g30620.1	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.03	Archaeplastida
MA_10429069g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_115669g0020	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_131g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
MA_138676g0010	No alias	RNA editing factor (ECD1)	0.04	Archaeplastida
MA_30949g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
MA_34492g0020	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_3471g0010	No alias	RNA editing factor (MEF19)	0.03	Archaeplastida
MA_3612g0010	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.03	Archaeplastida
MA_38266g0010	No alias	RNA editing factor (MEF19). RNA editing factor (OTP82)	0.03	Archaeplastida
MA_472579g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_502206g0010	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.04	Archaeplastida
MA_8210920g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
MA_8678g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
MA_9415113g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
Solyc01g091610.1.1	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
Solyc01g099000.1.1	No alias	Pentatricopeptide repeat-containing protein At3g05340...	0.04	Archaeplastida
Solyc01g110010.3.1	No alias	Pentatricopeptide repeat-containing protein At1g74600,...	0.05	Archaeplastida
Solyc03g007840.1.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
Solyc03g082830.2.1	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
Solyc03g114010.3.1	No alias	Pentatricopeptide repeat-containing protein At2g29760,...	0.06	Archaeplastida
Solyc03g115790.1.1	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.04	Archaeplastida
Solyc03g120460.4.1	No alias	No annotation	0.04	Archaeplastida
Solyc04g005460.1.1	No alias	Pentatricopeptide repeat-containing protein At2g20540...	0.04	Archaeplastida
Solyc04g063300.3.1	No alias	Pentatricopeptide repeat-containing protein At3g26540...	0.03	Archaeplastida
Solyc05g012630.2.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Solyc06g069700.4.1	No alias	Pentatricopeptide repeat-containing protein At5g61400...	0.07	Archaeplastida
Solyc06g084580.1.1	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.07	Archaeplastida
Solyc07g009220.2.1	No alias	Pentatricopeptide repeat-containing protein At2g34400...	0.05	Archaeplastida
Solyc07g055310.1.1	No alias	Pentatricopeptide repeat-containing protein At2g41080...	0.05	Archaeplastida
Solyc08g014100.1.1	No alias	Pentatricopeptide repeat-containing protein At5g43790...	0.07	Archaeplastida
Solyc08g023640.1.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.07	Archaeplastida
Solyc09g010070.1.1	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.05	Archaeplastida
Solyc09g090220.3.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Solyc11g005960.1.1	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.05	Archaeplastida
Solyc11g005970.1.1	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.04	Archaeplastida
Solyc11g007230.1.1	No alias	Pentatricopeptide repeat-containing protein At3g53360,...	0.07	Archaeplastida
Solyc12g042400.1.1	No alias	Pentatricopeptide repeat-containing protein At2g29760,...	0.05	Archaeplastida
Zm00001e010837_P001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.03	Archaeplastida
Zm00001e033335_P001	No alias	Pentatricopeptide repeat-containing protein At5g61800...	0.04	Archaeplastida
Zm00001e041048_P001	No alias	RNA editing factor (OTP86)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003951	NAD+ kinase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
BP	GO:0006415	translational termination	IEP	Neighborhood
BP	GO:0006733	oxidoreduction coenzyme metabolic process	IEP	Neighborhood
BP	GO:0006739	NADP metabolic process	IEP	Neighborhood
BP	GO:0006741	NADP biosynthetic process	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0022411	cellular component disassembly	IEP	Neighborhood
BP	GO:0032984	protein-containing complex disassembly	IEP	Neighborhood
BP	GO:0043624	cellular protein complex disassembly	IEP	Neighborhood
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	Neighborhood
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	72	116
IPR002885	Pentatricopeptide_repeat	274	323
IPR002885	Pentatricopeptide_repeat	151	174
IPR002885	Pentatricopeptide_repeat	351	374
IPR002885	Pentatricopeptide_repeat	422	445
IPR032867	DYW_dom	450	573

External Links

No external refs found!

GSVIVT01017989001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation