GSVIVT01017996001

Description : Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana

Gene families : OG0021035 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0017461 (LandPlants) Phylogenetic Tree(s): OG_05_0017461_tree ,
OG_06_0019990 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01017996001
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method	Actions
Solyc09g082170.4.1	No alias	Pentatricopeptide repeat-containing protein At4g14820...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006353	DNA-templated transcription, termination	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	163	186
IPR002885	Pentatricopeptide_repeat	493	518
IPR002885	Pentatricopeptide_repeat	263	284
IPR032867	DYW_dom	594	717
IPR002885	Pentatricopeptide_repeat	318	366
IPR002885	Pentatricopeptide_repeat	419	466
IPR002885	Pentatricopeptide_repeat	187	233

External Links

No external refs found!

GSVIVT01017996001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation