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  5. GSVIVT01018090001

GSVIVT01018090001


Description : Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana


Gene families : OG0003733 (Archaeplastida) Phylogenetic Tree(s): OG0003733_tree ,
OG_05_0003722 (LandPlants) Phylogenetic Tree(s): OG_05_0003722_tree ,
OG_06_0003603 (SeedPlants) Phylogenetic Tree(s): OG_06_0003603_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018090001
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AT1G73710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Gb_20571 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
LOC_Os03g06710.1 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.03 Archaeplastida
LOC_Os07g28900.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
MA_102823g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.05 Archaeplastida
MA_118886g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
MA_185599g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
MA_547597g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc07g054480.3.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
Solyc09g083110.3.1 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.06 Archaeplastida
Zm00001e000477_P001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 307 337
IPR002885 Pentatricopeptide_repeat 412 442
IPR033443 PPR_long 670 820
IPR002885 Pentatricopeptide_repeat 517 560
IPR002885 Pentatricopeptide_repeat 587 630
IPR002885 Pentatricopeptide_repeat 195 242
IPR002885 Pentatricopeptide_repeat 339 384
No external refs found!