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  5. GSVIVT01018109001

GSVIVT01018109001


Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0000737 (LandPlants) Phylogenetic Tree(s): OG_05_0000737_tree ,
OG_06_0001068 (SeedPlants) Phylogenetic Tree(s): OG_06_0001068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018109001
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
AMTR_s00028p00245370 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
AMTR_s00079p00107040 evm_27.TU.AmTr_v1... CRM-domain containing factor CFM3,... 0.06 Archaeplastida
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.11 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.1 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.14 Archaeplastida
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.03 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.1 Archaeplastida
AT5G16180 ATCRS1, CRS1 ortholog of maize chloroplast splicing factor CRS1 0.04 Archaeplastida
Cre14.g630301 No alias No description available 0.03 Archaeplastida
Gb_18301 No alias CRM-domain containing factor CFM2, chloroplastic... 0.07 Archaeplastida
Gb_18302 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
Gb_18303 No alias CRM-domain containing factor CFM2, chloroplastic... 0.05 Archaeplastida
Gb_37638 No alias CFM2-type plastidial RNA splicing factor. CFM3-type... 0.07 Archaeplastida
Gb_39217 No alias CFM2-type plastidial RNA splicing factor 0.04 Archaeplastida
LOC_Os04g39060.2 No alias CRM-domain containing factor CFM2, chloroplastic... 0.09 Archaeplastida
LOC_Os05g47850.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
LOC_Os09g19850.1 No alias CRM-domain containing factor CFM3,... 0.05 Archaeplastida
LOC_Os11g37990.1 No alias CFM3-type plastidial RNA splicing factor 0.08 Archaeplastida
MA_10233916g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.05 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.11 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.09 Archaeplastida
MA_8161870g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.05 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.05 Archaeplastida
Pp3c12_15870V3.1 No alias CRM family member 2 0.02 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.08 Archaeplastida
Pp3c7_23880V3.1 No alias CRM family member 2 0.02 Archaeplastida
Smo120007 No alias CRM-domain containing factor CFM3,... 0.05 Archaeplastida
Smo20706 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.11 Archaeplastida
Zm00001e004284_P002 No alias CRS1 plastidial RNA splicing factor 0.03 Archaeplastida
Zm00001e011272_P001 No alias CFM3-type plastidial RNA splicing factor 0.08 Archaeplastida
Zm00001e032339_P002 No alias CRM-domain containing factor CFM3,... 0.08 Archaeplastida
Zm00001e033939_P001 No alias CRM-domain containing factor CFM3,... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004325 ferrochelatase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006783 heme biosynthetic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 646 732
IPR001890 RNA-binding_CRM 220 303
IPR001890 RNA-binding_CRM 435 516
No external refs found!