GSVIVT01018216001


Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP62 nucleoporin


Gene families : OG0006534 (Archaeplastida) Phylogenetic Tree(s): OG0006534_tree ,
OG_05_0008725 (LandPlants) Phylogenetic Tree(s): OG_05_0008725_tree ,
OG_06_0009766 (SeedPlants) Phylogenetic Tree(s): OG_06_0009766_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018216001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT2G45000 EMB2766 structural constituent of nuclear pore 0.08 Archaeplastida
Cre16.g677700 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.05 Archaeplastida
LOC_Os01g63780.1 No alias NUP62 nucleoporin of nuclear pore complex 0.03 Archaeplastida
Mp1g03860.1 No alias NUP62 nucleoporin of nuclear pore complex 0.02 Archaeplastida
Pp3c15_14630V3.1 No alias structural constituent of nuclear pore 0.03 Archaeplastida
Solyc01g090670.3.1 No alias NUP62 nucleoporin of nuclear pore complex 0.06 Archaeplastida
Zm00001e028707_P001 No alias NUP62 nucleoporin of nuclear pore complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007758 Nucleoporin_NSP1_C 594 699
No external refs found!