Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP62 nucleoporin
Gene families : OG0006534 (Archaeplastida) Phylogenetic Tree(s): OG0006534_tree ,
OG_05_0008725 (LandPlants) Phylogenetic Tree(s): OG_05_0008725_tree ,
OG_06_0009766 (SeedPlants) Phylogenetic Tree(s): OG_06_0009766_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01018216001 | |
Cluster | HCCA: Cluster_44 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G45000 | EMB2766 | structural constituent of nuclear pore | 0.08 | Archaeplastida | |
Cre16.g677700 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.05 | Archaeplastida | |
LOC_Os01g63780.1 | No alias | NUP62 nucleoporin of nuclear pore complex | 0.03 | Archaeplastida | |
Mp1g03860.1 | No alias | NUP62 nucleoporin of nuclear pore complex | 0.02 | Archaeplastida | |
Pp3c15_14630V3.1 | No alias | structural constituent of nuclear pore | 0.03 | Archaeplastida | |
Solyc01g090670.3.1 | No alias | NUP62 nucleoporin of nuclear pore complex | 0.06 | Archaeplastida | |
Zm00001e028707_P001 | No alias | NUP62 nucleoporin of nuclear pore complex | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Neighborhood |
BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
BP | GO:0002097 | tRNA wobble base modification | IEP | Neighborhood |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
CC | GO:0005737 | cytoplasm | IEP | Neighborhood |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006260 | DNA replication | IEP | Neighborhood |
BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | Neighborhood |
BP | GO:0018208 | peptidyl-proline modification | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
CC | GO:0033588 | Elongator holoenzyme complex | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
BP | GO:0043412 | macromolecule modification | IEP | Neighborhood |
BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007758 | Nucleoporin_NSP1_C | 594 | 699 |
No external refs found! |