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  5. GSVIVT01018257001

GSVIVT01018257001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.KNOX transcription factor


Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0003089 (SeedPlants) Phylogenetic Tree(s): OG_06_0003089_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018257001
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00178300 evm_27.TU.AmTr_v1... Homeobox protein HD1 OS=Brassica napus 0.07 Archaeplastida
AMTR_s00085p00165180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.02 Archaeplastida
AT1G62990 KNAT7, IXR11 KNOTTED-like homeobox of Arabidopsis thaliana 7 0.03 Archaeplastida
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.03 Archaeplastida
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01009273001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
LOC_Os01g19694.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os03g51690.2 No alias transcription factor (KNOX) 0.06 Archaeplastida
LOC_Os03g51710.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os03g56140.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os07g03770.1 No alias transcription factor (KNOX) 0.05 Archaeplastida
LOC_Os08g19650.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
MA_10428500g0010 No alias transcription factor (KNOX) 0.02 Archaeplastida
Mp5g01600.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
Pp3c18_18720V3.1 No alias KNOTTED-like from Arabidopsis thaliana 2 0.03 Archaeplastida
Pp3c18_18750V3.1 No alias KNOTTED1-like homeobox gene 6 0.01 Archaeplastida
Pp3c19_5610V3.1 No alias No annotation 0.01 Archaeplastida
Pp3c19_5620V3.1 No alias KNOTTED-like from Arabidopsis thaliana 2 0.02 Archaeplastida
Pp3c21_10320V3.1 No alias KNOTTED-like from Arabidopsis thaliana 2 0.01 Archaeplastida
Solyc01g100510.4.1 No alias transcription factor (KNOX) 0.2 Archaeplastida
Solyc02g081120.4.1 No alias transcription factor (KNOX) 0.05 Archaeplastida
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.05 Archaeplastida
Solyc12g010410.3.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e005170_P001 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e005545_P001 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e005825_P002 No alias transcription factor (KNOX) 0.06 Archaeplastida
Zm00001e012293_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e012294_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e029453_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e032761_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR005541 KNOX2 73 119
IPR005540 KNOX1 20 61
No external refs found!