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  5. GSVIVT01018303001

GSVIVT01018303001


Description : Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana


Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0000298 (LandPlants) Phylogenetic Tree(s): OG_05_0000298_tree ,
OG_06_0010817 (SeedPlants) Phylogenetic Tree(s): OG_06_0010817_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018303001
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00190720 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.06 Archaeplastida
AMTR_s00024p00251490 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.04 Archaeplastida
AT1G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
Gb_03507 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.04 Archaeplastida
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
LOC_Os01g17320.1 No alias RNA editing factor (POCO) 0.02 Archaeplastida
LOC_Os02g55310.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.02 Archaeplastida
LOC_Os04g25410.1 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
LOC_Os04g46010.1 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.08 Archaeplastida
MA_128872g0020 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.02 Archaeplastida
MA_170161g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
MA_9997953g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
Smo444770 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.02 Archaeplastida
Solyc01g081320.4.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.03 Archaeplastida
Solyc01g089870.3.1 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.12 Archaeplastida
Solyc10g047370.2.1 No alias Pentatricopeptide repeat-containing protein At5g09450,... 0.03 Archaeplastida
Zm00001e007372_P001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006787 porphyrin-containing compound catabolic process IEP Neighborhood
BP GO:0006788 heme oxidation IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015996 chlorophyll catabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033015 tetrapyrrole catabolic process IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0046149 pigment catabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0047746 chlorophyllase activity IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 306 332
IPR002885 Pentatricopeptide_repeat 96 124
IPR002885 Pentatricopeptide_repeat 270 294
IPR002885 Pentatricopeptide_repeat 152 207
No external refs found!