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  5. GSVIVT01018392001

GSVIVT01018392001


Description : APO protein 1, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000992 (Archaeplastida) Phylogenetic Tree(s): OG0000992_tree ,
OG_05_0001157 (LandPlants) Phylogenetic Tree(s): OG_05_0001157_tree ,
OG_06_0003046 (SeedPlants) Phylogenetic Tree(s): OG_06_0003046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018392001
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
Gb_29513 No alias APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_36551 No alias APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os04g52520.4 No alias APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_931234g0010 No alias APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc08g080250.4.1 No alias APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc09g009400.4.1 No alias APO protein 3, mitochondrial OS=Arabidopsis thaliana... 0.06 Archaeplastida
Zm00001e006942_P002 No alias APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e023481_P001 No alias APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.15 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR023342 APO_dom 70 268
IPR023342 APO_dom 310 422
No external refs found!