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  5. GSVIVT01018446001

GSVIVT01018446001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018446001
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AT2G22540 SVP, AGL22 K-box region and MADS-box transcription factor family protein 0.06 Archaeplastida
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
GSVIVT01018839001 No alias Floral homeotic protein DEFICIENS OS=Antirrhinum majus 0.03 Archaeplastida
GSVIVT01022182001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01038474001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.08 Archaeplastida
Gb_41550 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os02g07430.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os03g08754.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os04g52410.2 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_10289256g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_15122g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_20180g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_333471g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_9284799g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Mp4g12490.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc03g006830.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e003670_P002 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002487 TF_Kbox 80 163
IPR002100 TF_MADSbox 3 50
No external refs found!