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  5. GSVIVT01018486001

GSVIVT01018486001


Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0000043 (SeedPlants) Phylogenetic Tree(s): OG_06_0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018486001
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00187850 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
AMTR_s00076p00127530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
AT1G72980 LBD7 LOB domain-containing protein 7 0.03 Archaeplastida
AT2G30340 LBD13 LOB domain-containing protein 13 0.05 Archaeplastida
AT3G50510 LBD28 LOB domain-containing protein 28 0.04 Archaeplastida
GSVIVT01006269001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
GSVIVT01010625001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.14 Archaeplastida
GSVIVT01016328001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.06 Archaeplastida
GSVIVT01016334001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01024662001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
Gb_10524 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_23688 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Pp3c23_14630V3.1 No alias LOB domain-containing protein 13 0.02 Archaeplastida
Solyc03g112430.1.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Solyc05g048740.3.1 No alias transcription factor (AS2/LOB) 0.08 Archaeplastida
Solyc06g050430.3.1 No alias transcription factor (AS2/LOB) 0.07 Archaeplastida
Solyc06g071660.3.1 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Solyc06g082310.3.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Solyc06g082430.2.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc12g010810.1.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 7 103
No external refs found!