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  5. GSVIVT01018516001

GSVIVT01018516001


Description : Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana


Gene families : OG0012150 (Archaeplastida) Phylogenetic Tree(s): OG0012150_tree ,
OG_05_0012060 (LandPlants) Phylogenetic Tree(s): OG_05_0012060_tree ,
OG_06_0012130 (SeedPlants) Phylogenetic Tree(s): OG_06_0012130_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018516001
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AT5G62370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
LOC_Os10g02650.1 No alias Pentatricopeptide repeat-containing protein At5g62370... 0.06 Archaeplastida
MA_10435571g0010 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.05 Archaeplastida
Solyc03g093150.3.1 No alias Pentatricopeptide repeat-containing protein At5g62370... 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 497 546
IPR002885 Pentatricopeptide_repeat 395 441
IPR002885 Pentatricopeptide_repeat 683 730
IPR002885 Pentatricopeptide_repeat 753 801
IPR002885 Pentatricopeptide_repeat 567 614
IPR002885 Pentatricopeptide_repeat 182 230
IPR002885 Pentatricopeptide_repeat 466 495
IPR002885 Pentatricopeptide_repeat 117 144
IPR002885 Pentatricopeptide_repeat 256 285
IPR002885 Pentatricopeptide_repeat 360 390
IPR002885 Pentatricopeptide_repeat 151 180
IPR005175 PPC_dom 855 930
IPR002885 Pentatricopeptide_repeat 84 105
No external refs found!