Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.61
Description : Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0012718 (LandPlants) Phylogenetic Tree(s): OG_05_0012718_tree ,
OG_06_0012669 (SeedPlants) Phylogenetic Tree(s): OG_06_0012669_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00040p00098330 | |
Cluster | HCCA: Cluster_52 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00003p00222920 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Archaeplastida | |
AMTR_s00029p00042600 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g33680... | 0.02 | Archaeplastida | |
AMTR_s00031p00067070 | No alias | Pentatricopeptide repeat-containing protein At5g03800... | 0.04 | Archaeplastida | |
AMTR_s00049p00210350 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
AMTR_s00053p00090700 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g13880... | 0.03 | Archaeplastida | |
AMTR_s00077p00031710 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | Archaeplastida | |
AT1G05750 | PDE247, CLB19 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
AT1G15510 | VAC1, ECB2, ATECB2 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT1G56570 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT3G29230 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT3G46790 | CRR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT3G57430 | OTP84 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT4G13650 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
AT4G18750 | DOT4 | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Archaeplastida | |
AT5G03800 | emb1899, EMB175, EMB166 | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
AT5G40410 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
AT5G66500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
Cpa|evm.model.tig00021312.67 | No alias | No description available | 0.02 | Archaeplastida | |
GSVIVT01000086001 | No alias | Pentatricopeptide repeat-containing protein At3g14330... | 0.03 | Archaeplastida | |
GSVIVT01003957001 | No alias | Pentatricopeptide repeat-containing protein At5g65570... | 0.04 | Archaeplastida | |
GSVIVT01005260001 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.03 | Archaeplastida | |
GSVIVT01007645001 | No alias | Pentatricopeptide repeat-containing protein ELI1,... | 0.03 | Archaeplastida | |
GSVIVT01008173001 | No alias | Pentatricopeptide repeat-containing protein At1g18485... | 0.03 | Archaeplastida | |
GSVIVT01009407001 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | Archaeplastida | |
GSVIVT01011479001 | No alias | Pentatricopeptide repeat-containing protein At3g29230... | 0.02 | Archaeplastida | |
GSVIVT01012201001 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.03 | Archaeplastida | |
GSVIVT01014727001 | No alias | Pentatricopeptide repeat-containing protein At4g21065... | 0.02 | Archaeplastida | |
GSVIVT01015461001 | No alias | Solute transport.primary active transport.ABC... | 0.03 | Archaeplastida | |
GSVIVT01017209001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
GSVIVT01017365001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Archaeplastida | |
GSVIVT01017378001 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | Archaeplastida | |
GSVIVT01017823001 | No alias | Pentatricopeptide repeat-containing protein At2g36980,... | 0.03 | Archaeplastida | |
GSVIVT01020091001 | No alias | RNA processing.organelle machineries.RNA... | 0.04 | Archaeplastida | |
GSVIVT01021268001 | No alias | Pentatricopeptide repeat-containing protein At4g18840... | 0.04 | Archaeplastida | |
GSVIVT01023971001 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.03 | Archaeplastida | |
GSVIVT01027077001 | No alias | RNA processing.organelle machineries.RNA... | 0.02 | Archaeplastida | |
GSVIVT01028022001 | No alias | Pentatricopeptide repeat-containing protein At3g62890... | 0.02 | Archaeplastida | |
GSVIVT01030080001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
GSVIVT01031251001 | No alias | Pentatricopeptide repeat-containing protein At5g48910... | 0.03 | Archaeplastida | |
GSVIVT01031733001 | No alias | Pentatricopeptide repeat-containing protein At4g33990... | 0.03 | Archaeplastida | |
GSVIVT01033304001 | No alias | Pentatricopeptide repeat-containing protein At2g02980,... | 0.04 | Archaeplastida | |
GSVIVT01036142001 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.03 | Archaeplastida | |
GSVIVT01036207001 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.03 | Archaeplastida | |
GSVIVT01036511001 | No alias | RNA processing.organelle machineries.RNA... | 0.05 | Archaeplastida | |
GSVIVT01036943001 | No alias | Pentatricopeptide repeat-containing protein At5g48910... | 0.04 | Archaeplastida | |
GSVIVT01037332001 | No alias | Pentatricopeptide repeat-containing protein At1g20230... | 0.03 | Archaeplastida | |
GSVIVT01037562001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
Gb_02194 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | Archaeplastida | |
Gb_04450 | No alias | OTP70 plastidial RNA splicing factor | 0.03 | Archaeplastida | |
Gb_08745 | No alias | RNA editing factor (OTP82) | 0.03 | Archaeplastida | |
Gb_09410 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | Archaeplastida | |
Gb_10133 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Archaeplastida | |
Gb_12240 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.02 | Archaeplastida | |
Gb_14459 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
Gb_16366 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.03 | Archaeplastida | |
Gb_18436 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.03 | Archaeplastida | |
Gb_21555 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Archaeplastida | |
Gb_23605 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.02 | Archaeplastida | |
Gb_27926 | No alias | Pentatricopeptide repeat-containing protein At3g53360,... | 0.02 | Archaeplastida | |
Gb_32017 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.02 | Archaeplastida | |
Gb_32051 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | Archaeplastida | |
Gb_32455 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | Archaeplastida | |
Gb_33719 | No alias | RNA editing factor (OTP82) | 0.03 | Archaeplastida | |
Gb_39558 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
Gb_41753 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | Archaeplastida | |
LOC_Os10g34720.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
LOC_Os11g29230.1 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
MA_10164206g0010 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | Archaeplastida | |
MA_10429540g0020 | No alias | Pentatricopeptide repeat-containing protein At4g14850... | 0.02 | Archaeplastida | |
MA_138676g0010 | No alias | RNA editing factor (ECD1) | 0.02 | Archaeplastida | |
MA_17949g0010 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.04 | Archaeplastida | |
MA_18165g0010 | No alias | Pentatricopeptide repeat-containing protein At3g12770... | 0.02 | Archaeplastida | |
MA_30949g0010 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | Archaeplastida | |
MA_31170g0010 | No alias | RNA editing factor (MEF19) | 0.04 | Archaeplastida | |
MA_34492g0020 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
MA_381817g0020 | No alias | Pentatricopeptide repeat-containing protein At2g22070... | 0.02 | Archaeplastida | |
MA_39801g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
MA_4438g0010 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
MA_50789g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.03 | Archaeplastida | |
MA_525914g0010 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
MA_52613g0020 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.02 | Archaeplastida | |
MA_72886g0010 | No alias | Pentatricopeptide repeat-containing protein At5g50390,... | 0.03 | Archaeplastida | |
MA_83898g0010 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
MA_86628g0010 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | Archaeplastida | |
MA_8678g0010 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | Archaeplastida | |
MA_8868720g0010 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.03 | Archaeplastida | |
MA_9415113g0010 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | Archaeplastida | |
MA_94165g0010 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
MA_9526611g0020 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | Archaeplastida | |
Smo228785 | No alias | Pentatricopeptide repeat-containing protein At2g33680... | 0.05 | Archaeplastida | |
Smo442088 | No alias | Pentatricopeptide repeat-containing protein At2g33760... | 0.02 | Archaeplastida | |
Smo47998 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.02 | Archaeplastida | |
Smo76236 | No alias | Pentatricopeptide repeat-containing protein ELI1,... | 0.03 | Archaeplastida | |
Smo83339 | No alias | Pentatricopeptide repeat-containing protein At3g12770... | 0.02 | Archaeplastida | |
Smo84339 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
Smo92610 | No alias | Pentatricopeptide repeat-containing protein At5g56310... | 0.02 | Archaeplastida | |
Solyc01g081020.1.1 | No alias | RNA editing factor (OTP80) | 0.02 | Archaeplastida | |
Solyc01g100790.1.1 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.02 | Archaeplastida | |
Solyc01g104090.4.1 | No alias | Pentatricopeptide repeat-containing protein At1g20230... | 0.02 | Archaeplastida | |
Solyc02g065560.1.1 | No alias | Pentatricopeptide repeat-containing protein At2g33680... | 0.02 | Archaeplastida | |
Solyc02g081900.4.1 | No alias | RNA editing factor (OTP84) | 0.03 | Archaeplastida | |
Solyc02g088650.1.1 | No alias | Pentatricopeptide repeat-containing protein At5g39350... | 0.02 | Archaeplastida | |
Solyc03g025700.2.1 | No alias | OTP70 plastidial RNA splicing factor | 0.05 | Archaeplastida | |
Solyc05g006800.2.1 | No alias | Pentatricopeptide repeat-containing protein At1g59720,... | 0.02 | Archaeplastida | |
Solyc06g066080.1.1 | No alias | Pentatricopeptide repeat-containing protein At4g21065... | 0.02 | Archaeplastida | |
Solyc07g055310.1.1 | No alias | Pentatricopeptide repeat-containing protein At2g41080... | 0.02 | Archaeplastida | |
Solyc09g010070.1.1 | No alias | Pentatricopeptide repeat-containing protein At4g33990... | 0.02 | Archaeplastida | |
Solyc09g082450.1.1 | No alias | RNA editing factor (YS1) | 0.03 | Archaeplastida | |
Solyc11g011860.1.1 | No alias | Pentatricopeptide repeat-containing protein At3g14330... | 0.02 | Archaeplastida | |
Solyc11g017370.3.1 | No alias | RNA editing factor (AEF1) | 0.02 | Archaeplastida | |
Solyc11g071370.1.1 | No alias | RNA editing factor (CLB19) | 0.02 | Archaeplastida | |
Zm00001e003605_P001 | No alias | Pentatricopeptide repeat-containing protein DOT4,... | 0.07 | Archaeplastida | |
Zm00001e007042_P001 | No alias | RNA editing factor (AEF1) | 0.06 | Archaeplastida | |
Zm00001e011875_P001 | No alias | RNA editing factor (OTP85) | 0.02 | Archaeplastida | |
Zm00001e021457_P001 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | Archaeplastida | |
Zm00001e023498_P001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
Zm00001e029186_P001 | No alias | Pentatricopeptide repeat-containing protein At1g19720... | 0.05 | Archaeplastida | |
Zm00001e031351_P001 | No alias | RNA editing factor (ECD1) | 0.03 | Archaeplastida | |
Zm00001e032499_P001 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Neighborhood |
MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
MF | GO:0003924 | GTPase activity | IEP | Neighborhood |
MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | Neighborhood |
MF | GO:0004673 | protein histidine kinase activity | IEP | Neighborhood |
MF | GO:0005319 | lipid transporter activity | IEP | Neighborhood |
MF | GO:0005342 | organic acid transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0005343 | organic acid:sodium symporter activity | IEP | Neighborhood |
MF | GO:0005525 | GTP binding | IEP | Neighborhood |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006787 | porphyrin-containing compound catabolic process | IEP | Neighborhood |
BP | GO:0006814 | sodium ion transport | IEP | Neighborhood |
MF | GO:0008028 | monocarboxylic acid transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0008508 | bile acid:sodium symporter activity | IEP | Neighborhood |
MF | GO:0008509 | anion transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0008514 | organic anion transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0009314 | response to radiation | IEP | Neighborhood |
CC | GO:0009317 | acetyl-CoA carboxylase complex | IEP | Neighborhood |
BP | GO:0009416 | response to light stimulus | IEP | Neighborhood |
BP | GO:0009581 | detection of external stimulus | IEP | Neighborhood |
BP | GO:0009582 | detection of abiotic stimulus | IEP | Neighborhood |
BP | GO:0009583 | detection of light stimulus | IEP | Neighborhood |
BP | GO:0009584 | detection of visible light | IEP | Neighborhood |
BP | GO:0009605 | response to external stimulus | IEP | Neighborhood |
BP | GO:0009628 | response to abiotic stimulus | IEP | Neighborhood |
MF | GO:0015081 | sodium ion transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0015125 | bile acid transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0015293 | symporter activity | IEP | Neighborhood |
MF | GO:0015294 | solute:cation symporter activity | IEP | Neighborhood |
MF | GO:0015355 | secondary active monocarboxylate transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0015370 | solute:sodium symporter activity | IEP | Neighborhood |
BP | GO:0015994 | chlorophyll metabolic process | IEP | Neighborhood |
BP | GO:0015996 | chlorophyll catabolic process | IEP | Neighborhood |
BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Neighborhood |
MF | GO:0016421 | CoA carboxylase activity | IEP | Neighborhood |
MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Neighborhood |
MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | Neighborhood |
BP | GO:0018298 | protein-chromophore linkage | IEP | Neighborhood |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
MF | GO:0031072 | heat shock protein binding | IEP | Neighborhood |
BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Neighborhood |
MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Neighborhood |
BP | GO:0033015 | tetrapyrrole catabolic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
BP | GO:0042440 | pigment metabolic process | IEP | Neighborhood |
BP | GO:0046149 | pigment catabolic process | IEP | Neighborhood |
MF | GO:0046943 | carboxylic acid transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0047746 | chlorophyllase activity | IEP | Neighborhood |
BP | GO:0051186 | cofactor metabolic process | IEP | Neighborhood |
BP | GO:0051187 | cofactor catabolic process | IEP | Neighborhood |
BP | GO:0051606 | detection of stimulus | IEP | Neighborhood |
MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | Neighborhood |
MF | GO:0140161 | monocarboxylate:sodium symporter activity | IEP | Neighborhood |
MF | GO:1901618 | organic hydroxy compound transmembrane transporter activity | IEP | Neighborhood |
MF | GO:2001070 | starch binding | IEP | Neighborhood |
No external refs found! |