GSVIVT01018951001

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor

Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0000055 (LandPlants) Phylogenetic Tree(s): OG_05_0000055_tree ,
OG_06_0000264 (SeedPlants) Phylogenetic Tree(s): OG_06_0000264_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01018951001
Cluster	HCCA: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00121410	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT2G18380	GATA20	GATA transcription factor 20	0.04	Archaeplastida
AT3G20750	GATA29	GATA transcription factor 29	0.03	Archaeplastida
AT4G26150	GATA22, CGA1, GNL	cytokinin-responsive gata factor 1	0.03	Archaeplastida
Cre01.g025050	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Cre06.g266850	No alias	No description available	0.02	Archaeplastida
Cre10.g435450	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Gb_24250	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os01g74540.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os02g43150.1	No alias	transcription factor (GATA)	0.06	Archaeplastida
LOC_Os04g45650.2	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os05g50270.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
LOC_Os10g40810.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os12g42970.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
MA_161258g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_92522g0010	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc02g085190.2.1	No alias	transcription factor (GATA)	0.07	Archaeplastida
Solyc03g033660.4.1	No alias	transcription factor (GATA)	0.16	Archaeplastida
Solyc03g120890.3.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e006272_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e026601_P001	No alias	transcription factor (GATA)	0.05	Archaeplastida
Zm00001e032513_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e037876_P002	No alias	transcription factor (GATA)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0007186	G-protein coupled receptor signaling pathway	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	113	147

External Links

No external refs found!

GSVIVT01018951001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation