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  5. AMTR_s00040p00106300

AMTR_s00040p00106300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.73

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL36a component


Gene families : OG0002069 (Archaeplastida) Phylogenetic Tree(s): OG0002069_tree ,
OG_05_0002870 (LandPlants) Phylogenetic Tree(s): OG_05_0002870_tree ,
OG_06_0002967 (SeedPlants) Phylogenetic Tree(s): OG_06_0002967_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00106300
Cluster HCCA: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
AT3G23390 No alias Zinc-binding ribosomal protein family protein 0.09 Archaeplastida
AT4G14320 No alias Zinc-binding ribosomal protein family protein 0.17 Archaeplastida
Cpa|evm.model.tig00000489.11 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Cre06.g310700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
GSVIVT01012052001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
GSVIVT01032097001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Gb_13148 No alias component RPL36a of LSU proteome component 0.05 Archaeplastida
Gb_34419 No alias component RPL36a of LSU proteome component 0.07 Archaeplastida
LOC_Os07g26740.1 No alias component RPL36a of LSU proteome component 0.07 Archaeplastida
MA_99845g0010 No alias component RPL36a of LSU proteome component 0.21 Archaeplastida
Mp2g25770.1 No alias component RPL36a of LSU proteome component 0.17 Archaeplastida
Pp3c26_11220V3.1 No alias Zinc-binding ribosomal protein family protein 0.18 Archaeplastida
Pp3c2_27320V3.1 No alias Zinc-binding ribosomal protein family protein 0.08 Archaeplastida
Pp3c3_10260V3.1 No alias Zinc-binding ribosomal protein family protein 0.18 Archaeplastida
Pp3c4_27290V3.1 No alias Zinc-binding ribosomal protein family protein 0.08 Archaeplastida
Pp3c7_20120V3.1 No alias Zinc-binding ribosomal protein family protein 0.02 Archaeplastida
Smo161986 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Solyc03g112850.3.1 No alias component RPL36a of LSU proteome component 0.07 Archaeplastida
Zm00001e010489_P002 No alias component RPL36a of LSU proteome component 0.18 Archaeplastida
Zm00001e033410_P001 No alias component RPL36a of LSU proteome component 0.08 Archaeplastida
Zm00001e035123_P001 No alias component RPL36a of LSU proteome component 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005853 eukaryotic translation elongation factor 1 complex IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR000552 Ribosomal_L44e 27 102
No external refs found!